PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG595200.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CAMTA
Protein Properties Length: 884aa    MW: 97795.7 Da    PI: 5.3303
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG595200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1181.11.3e-56211362117
                 CG-1   2 lkekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 
                          l+ ++rwl+++ei++iL n++k++++ e+++rp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v+vl+cyYah+een
  Pavir.2NG595200.2.p  21 LEAQNRWLRPNEICQILSNYKKFSIAPEPPNRPPSGSLFLFDRKILRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDVLHCYYAHGEEN 110
                          5679************************************************************************************** PP

                 CG-1  92 ptfqrrcywlLeeelekivlvhylev 117
                          ++fqrr+ywlLee + +ivlvhyle 
  Pavir.2NG595200.2.p 111 ENFQRRTYWLLEEGFMNIVLVHYLEI 136
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.88116142IPR005559CG-1 DNA-binding domain
SMARTSM010768.9E-7719137IPR005559CG-1 DNA-binding domain
PfamPF038597.2E-5122135IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.2E-6440527IPR013783Immunoglobulin-like fold
CDDcd001020.00662440528No hitNo description
SuperFamilySSF812961.05E-17441527IPR014756Immunoglobulin E-set
PfamPF018331.7E-5441514IPR002909IPT domain
SuperFamilySSF484033.89E-18618733IPR020683Ankyrin repeat-containing domain
CDDcd002041.64E-14619731No hitNo description
Gene3DG3DSA:1.25.40.201.1E-18633733IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029717.82639733IPR020683Ankyrin repeat-containing domain
PfamPF127963.8E-8645734IPR020683Ankyrin repeat-containing domain
SMARTSM002480.14672704IPR002110Ankyrin repeat
PROSITE profilePS500889.19672704IPR002110Ankyrin repeat
SMARTSM00248290711740IPR002110Ankyrin repeat
PROSITE profilePS500968.919847876IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 884 aa     Download sequence    Send to blast
MAEIRKYAMS NQAPDIPQIL LEAQNRWLRP NEICQILSNY KKFSIAPEPP NRPPSGSLFL  60
FDRKILRYFR KDGHNWRKKK DGKTVKEAHE KLKVGSVDVL HCYYAHGEEN ENFQRRTYWL  120
LEEGFMNIVL VHYLEIKGGK QNFNRAKEAE ENAGLSADSP ACSNSFASQS QVASQSMDAE  180
SPISGQISEY EDAETDNCRA SSRYHPFTEM QQPVDGIMMD NLLGASAPSV SVNNLGYLGE  240
MQPTPANFNN HFVTHNDVST AFSETAAGLR GGPRSSIDSV RFAEPYPEYP GGFMEPTLYS  300
SVATVGNNLD DSLKTFMSEA LYTNNLTQKE VDALSAAGIT SSQADNDGYT DQGARYPLLK  360
QSSLDPFKIE PDGLKKFDSF SRWMSNELPE VADLDIKSSS DAFWSTTETV NVADGSSMPI  420
NEQLDAFVVS PSLSQDQLFS IIDVSPSWAY NGTKTKVIIT GTFLAKKEDV ENCRWSCMFG  480
DVEVSAEVLV DGSLRCYTPV HHSGRVPFYV TCSNRVACSE VREFEFRDSE THYMDTSDLH  540
TTGINEMHLH IRLDKLLSLG PEDYEKYVLS NGNKSELIDT INSLMLDDKL SNLALPSDEK  600
ELSTVRDLNL EKQVKEKLYY WLIHKIHDDG KGPNVLGKEG QGVIHLVAAL GYDWAVKPIV  660
AAGVNVNFRD IRGWTALHWA ASCGRERTVG ALIANGAASG ALTDPTQQFP SGRTPADLAS  720
ENGHKGIAGF LAESALTSHL SALTLKESQG GNVEEICGLA AAEDFAEPSS AQLACVDSQA  780
ESLKDSLGAV RKSTQAAARI FQAFRVESFH RKKVIEYGDD DCGLSDERTL SLISLKNAKP  840
GHSDMPMHSA AVRIQNKFRG WKGRKEFMII RQKIVKIQVF TFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.306231e-172leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG595200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800735.10.0calmodulin-binding transcription activator 3-like
TrEMBLA0A2T7EYS20.0A0A2T7EYS2_9POAL; Uncharacterized protein
STRINGPavir.Ba00386.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G09410.20.0ethylene induced calmodulin binding protein