PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG616300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 261aa    MW: 28549.3 Da    PI: 10.2139
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG616300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.65e-17172215549
                          CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkel 49 
                          +r++r++kNRe+A rsR+RK+a++ eLe+kv++Le+eN++L+ +l
  Pavir.2NG616300.1.p 172 RRQKRMIKNRESAARSRARKQAYTNELENKVAQLEEENQRLR-KL 215
                          79***************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-15166214No hitNo description
SMARTSM003383.4E-10168223IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.576170214IPR004827Basic-leucine zipper domain
CDDcd147075.00E-22172216No hitNo description
SuperFamilySSF579592.06E-11172214No hitNo description
PfamPF001701.1E-13172214IPR004827Basic-leucine zipper domain
PROSITE patternPS000360175190IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGVQTMSSHG DDGRRGLSRQ GSVYSLTLTE VETQLGEPLR SMNLGDLLRT VLPAGPATQP  60
APAAKKTVDE VWRDIQSASG ARQPTMGEMT LEDFLSRAGV TVDAGPHWLH QYPPPQQYVV  120
PLGPGAGPAV DAVYRDGVGV GVGVFLSQVA GRKRGAAAAV GGDGVVERTV ERRQKRMIKN  180
RESAARSRAR KQAYTNELEN KVAQLEEENQ RLRKLKMLPP LEPPPEHEQR PVHQPEHERR  240
PVAQPEEAKQ PLRRRNSATF *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151174RKRGAAAAVGGDGVVERTVERRQK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in embryo during the latest stages of seed maturation. {ECO:0000269|PubMed:15642716}.
UniprotTISSUE SPECIFICITY: Predominantly expressed in seeds. {ECO:0000269|PubMed:12376636}.
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG616300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0332471e-145BT033247.1 Zea mays full-length cDNA clone ZM_BFb0124H20 mRNA, complete cds.
GenBankBT0554751e-145BT055475.1 Zea mays full-length cDNA clone ZM_BFb0325H08 mRNA, complete cds.
GenBankKJ7282081e-145KJ728208.1 Zea mays clone pUT6484 bZIP transcription factor (bZIP92) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799932.11e-144ABSCISIC ACID-INSENSITIVE 5-like protein 5
RefseqXP_025799933.11e-144ABSCISIC ACID-INSENSITIVE 5-like protein 5
RefseqXP_025799934.11e-144ABSCISIC ACID-INSENSITIVE 5-like protein 5
SwissprotQ9C5Q21e-52AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A2T7F0D11e-143A0A2T7F0D1_9POAL; Uncharacterized protein
STRINGPavir.Ba00263.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.32e-39bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]