PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG628000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 152aa MW: 16725.4 Da PI: 4.6821

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG628000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	20.7	9.2e-07	25	67	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R ++ e+L +vkeL++ ++L +++++lk+ev k +s+v Pavir.2NG628000.1.p 25 RHPRLSGFEHLDARVKELTSSQSELLERIQKLKQEVHKWRSNV 67 555666789****************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	2.1E-4	20	67	No hit	No description
SuperFamily	SSF58100	4.18E-5	48	117	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MAAETTAPPP PSSLPSPAAA AATPRHPRLS GFEHLDARVK ELTSSQSELL ERIQKLKQEV 60 HKWRSNVETQ VNTCQNELHG LKKGLDSEVE QLKSEMEEIR SAIQEEKGNL PAQITHSEMS 120 NNDTEQARQT QDQASKVDTD ASMEEQTATE P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG628000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804341.1	2e-75	uncharacterized protein LOC112883274
TrEMBL	A0A3L6TCY1	2e-77	A0A3L6TCY1_PANMI; Uncharacterized protein
STRING	Pavir.J05614.1.p	1e-106	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13116	2	2

Link Out ? help Back to Top
Phytozome	Pavir.2NG628000.1.p