PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.2NG632700.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 347aa MW: 37560.2 Da PI: 7.9902

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.2NG632700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	102	162	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rn+PvG+grrk+k+ss Pavir.2NG632700.1.p 102 PDKILPCPRCNSMDTKFCYYNNYNIKQPRHFCKSCQRYWTAGGSMRNIPVGAGRRKSKSSS 162 7899*****************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	99	159	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.1E-32	104	160	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	106	160	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	108	144	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence Send to blast
MELAGAASPR SPESHVATPR PPPQPPEKDA CEGTGDTIIT GEKPCTHQEL DLGQTNSSSL 60 NSSSECENQA PSNDEMTGSE SNLETAKTEG DVPRGEKVLK KPDKILPCPR CNSMDTKFCY 120 YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSANCRSILI PGSSVATPVG 180 ESTLFPLPIN GNQAAVNFEP DSPLCNSMAS VLKIGGEQNK NASPASTAQP RNGETQTCPP 240 STTTLDGPRS DSHKVTVSAH QNGVVGHGNG VTSMHPIPFF PGPSFCVPME SSMDGILPLQ 300 HLYAQPQQKQ RILQKMARAV VMFNGMFHQW YRYCHQDSAV HLFQFR*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence Send to blast

MELAGAASPR SPESHVATPR PPPQPPEKDA CEGTGDTIIT GEKPCTHQEL DLGQTNSSSL  60
NSSSECENQA PSNDEMTGSE SNLETAKTEG DVPRGEKVLK KPDKILPCPR CNSMDTKFCY  120
YNNYNIKQPR HFCKSCQRYW TAGGSMRNIP VGAGRRKSKS SSANCRSILI PGSSVATPVG  180
ESTLFPLPIN GNQAAVNFEP DSPLCNSMAS VLKIGGEQNK NASPASTAQP RNGETQTCPP  240
STTTLDGPRS DSHKVTVSAH QNGVVGHGNG VTSMHPIPFF PGPSFCVPME SSMDGILPLQ  300
HLYAQPQQKQ RILQKMARAV VMFNGMFHQW YRYCHQDSAV HLFQFR*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.13662	0.0	callus\| leaf\| root\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.2NG632700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004958725.1	1e-170	cyclic dof factor 3
TrEMBL	K3ZSU3	1e-168	K3ZSU3_SETIT; Uncharacterized protein
STRING	Pavir.J06233.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1434	38	116

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-40	cycling DOF factor 2

Link Out ? help Back to Top
Phytozome	Pavir.2NG632700.1.p