PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG633100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 290aa    MW: 31914.2 Da    PI: 4.8805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG633100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1775e-55181451129
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtd e+vv+yL++k+ + ++++  vi++vd++k+ePwdLp k+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdk
  Pavir.2NG633100.1.p  18 LPPGFRFHPTDAEVVVDYLTPKALDGSFSC-VVISDVDLNKTEPWDLPGKAKMGEKEWYFFCHKDRKYPTGMRTNRATASGYWKATGKDK 106
                          79**************************99.78***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          e+++ +g lvg+kktLvf++grap+gekt Wvmheyrle
  Pavir.2NG633100.1.p 107 EIYRGRGVLVGMKKTLVFHTGRAPRGEKTPWVMHEYRLE 145
                          *************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-6314168IPR003441NAC domain
PROSITE profilePS5100557.3718168IPR003441NAC domain
PfamPF023651.2E-2719144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MSEVSVMNPG EEEPRLVLPP GFRFHPTDAE VVVDYLTPKA LDGSFSCVVI SDVDLNKTEP  60
WDLPGKAKMG EKEWYFFCHK DRKYPTGMRT NRATASGYWK ATGKDKEIYR GRGVLVGMKK  120
TLVFHTGRAP RGEKTPWVMH EYRLEGKLPP NLPRSAKDEW AVCRVFNKDL AAKQPGQMAP  180
AAGPEPTIPF DLDDIFGVPP LEDSEYAVDD LLLDFNSSSG DAAGMGGGGG YQVIKAEQQA  240
LQVPAASNPR GAAEQAIRAH CKPEAAPYLE VDDLLLDEGF MDYSNMWNC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-5351742171NO APICAL MERISTEM PROTEIN
1ut4_B5e-5351742171NO APICAL MERISTEM PROTEIN
1ut7_A5e-5351742171NO APICAL MERISTEM PROTEIN
1ut7_B5e-5351742171NO APICAL MERISTEM PROTEIN
4dul_A5e-5351742171NAC domain-containing protein 19
4dul_B5e-5351742171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG633100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0961831e-171FP096183.1 Phyllostachys edulis cDNA clone: bphyem213g04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025804669.11e-174NAC domain-containing protein 87-like
SwissprotQ9FK441e-82NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A2S3H4Z91e-172A0A2S3H4Z9_9POAL; Uncharacterized protein
TrEMBLA0A2T7F0721e-172A0A2T7F072_9POAL; Uncharacterized protein
STRINGPavir.Ba00246.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.26e-85Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]