PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG000100.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Dof

Protein Properties

Length: 260aa MW: 27642.9 Da PI: 9.0156

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG000100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.5	1.7e-39	32	91	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+al+cprCdstntkfCyynnys++qPryfCkaCrryWt+GG+lrnvPvGgg+rknk++ Pavir.3KG000100.1.p 32 HEQALNCPRCDSTNTKFCYYNNYSTTQPRYFCKACRRYWTQGGTLRNVPVGGGCRKNKHN 91 7899******************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	30	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	6.9E-34	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.087	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence Send to blast
MVASPAREEA TAARNVKAKQ ASGGERKPRP QHEQALNCPR CDSTNTKFCY YNNYSTTQPR 60 YFCKACRRYW TQGGTLRNVP VGGGCRKNKH NRTGGSGGSS SSAPSASSSS SSDPKKVNIT 120 QQLMAMMPVA AAVTTDFPNV LPTFMSTSGS FELPNYDHQL PFAPLSLSPN PSMTTSFLDM 180 LRVGFLDGTS SNYGVRSNIN NGMVLPFLPP SPFGAMQHGH GVIGDQQLVG SLQDAEEVKP 240 IATEHGNING DGGLFGGGSS

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Seed endosperm. {ECO:0000269\|PubMed:9207153}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. May enhance the DNA binding of the bZIP transcription factor Opaque-2 to O2 binding site elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG000100.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK376388	1e-45	AK376388.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3122H18.
GenBank	AM084360	1e-45	AM084360.1 Hordeum vulgare subsp. vulgare dof12 gene for dof zinc finger protein 12, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025807789.1	1e-136	dof zinc finger protein PBF-like
Swissprot	O24463	5e-57	PBF_MAIZE; Dof zinc finger protein PBF
TrEMBL	A0A2T7E477	1e-136	A0A2T7E477_9POAL; Uncharacterized protein
STRING	Pavir.J13869.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-38	Dof family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG000100.1.p

Publications ? help Back to Top
Lang Z, et al. Defining the Role of prolamin-box binding factor1 Gene During Maize Domestication. J. Hered., 2014 Jul-Aug. 105(4): p. 576-582 [PMID:24683184] Zhang Z,Zheng X,Yang J,Messing J,Wu Y Maize endosperm-specific transcription factors O2 and PBF network the regulation of protein and starch synthesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(39): p. 10842-7 [PMID:27621432]