PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG006400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 169aa    MW: 18746.4 Da    PI: 10.3131
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG006400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1361.5e-111645534
                         CHHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeek 34
                         k  rr+++NReAAr+sR+RKka+i++Le  
  Pavir.3KG006400.1.p 16 KTIRRLAQNREAARKSRLRKKAYIQQLESS 45
                         6789***********************974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.2E-81157No hitNo description
SMARTSM003388.0E-71294IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.9561458IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.7E-81651No hitNo description
PfamPF001709.4E-91650IPR004827Basic-leucine zipper domain
CDDcd147082.65E-221668No hitNo description
PROSITE patternPS0003601934IPR004827Basic-leucine zipper domain
PfamPF141442.4E-2996168IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSTSSTPKTG KTLDPKTIRR LAQNREAARK SRLRKKAYIQ QLESSKLKLA QMEQDMQRAR  60
SQGLFLGGAP GANTSSGAGM FDVEYARWLD ENGRRMAELH GALHAHLPDG DLRAIVDDTL  120
THHDELFQLK AVAAKSDVFH IITGVWTTPA ERCFLWMGGF RPSDLLKV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.56072e-37callus| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG006400.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1113211e-158KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809311.11e-114transcription factor TGAL4-like isoform X2
SwissprotQ53Q704e-95TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBLA0A2T7E5651e-113A0A2T7E565_9POAL; Uncharacterized protein
STRINGPavir.Ca00148.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2537845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-82bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]
  3. Miyamoto K, et al.
    Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells.
    J. Plant Physiol., 2015. 173: p. 19-27
    [PMID:25462074]