PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG007400.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 324aa    MW: 35267.6 Da    PI: 6.9385
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG007400.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY72.55.4e-23106169359
                          -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTE....EEEEEES--SS- CS
                 WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkv....veitYegeHnhe 59 
                          Dgy+WrKYGqK+++g+ ++rsYYrCt +   gCp+k+ v+r+++d+ +     +++Y geH+++
  Pavir.3KG007400.3.p 106 DGYQWRKYGQKQIEGAIYARSYYRCTRSaeqGCPAKRTVQRNDDDGGAaapkYTVVYMGEHTCT 169
                          9*************************988889*************97622225899*****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-2396169IPR003657WRKY domain
SuperFamilySSF1182902.75E-21100169IPR003657WRKY domain
SMARTSM007742.7E-28104170IPR003657WRKY domain
PROSITE profilePS5081118.533106159IPR003657WRKY domain
PfamPF031061.4E-23106168IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLFFMPSPTT TKVDDDQSSS GGGTEGGQQP PASSSSSCCD GRRRRPRGSK RGRPQDDDSK  60
SYNGGEQHLE PPRHKSCKTR KQQNKQRRQK MSGGTSSLVT SVPDFDGYQW RKYGQKQIEG  120
AIYARSYYRC TRSAEQGCPA KRTVQRNDDD GGAAAPKYTV VYMGEHTCTP NDDSMEAPPI  180
ILETTTVVPA VIKSTNNRRT PQDHHHDGTI TVTSVAAPTS SSGGSYCSSS TSTNNTVTAG  240
IDDSPAISDD ITYWSRLFGV HDSWAPATAA ALQEMEEDYF TGPIRSPVHI AAADACWTIE  300
DHHLLLQQLA SNDQHPTVSH FSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-1496168168OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG007400.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586321e-94KU058632.1 UNVERIFIED: Panicum miliaceum WRKY30-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808246.12e-85probable WRKY transcription factor 65 isoform X1
RefseqXP_025828062.11e-85WRKY transcription factor 22-like isoform X1
TrEMBLA0A2T7E4I13e-87A0A2T7E4I1_9POAL; Uncharacterized protein
STRINGPavir.Ca00085.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40750.17e-16WRKY DNA-binding protein 54