PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG008800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 351aa    MW: 36818.3 Da    PI: 9.582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG008800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011168190123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ Cgks++++  L  H  +H
  Pavir.3KG008800.1.p 168 YTCKFCGKSYTSHQALGGHVAKH 190
                          9***************9999988 PP
2zf-C2H214.30.00012228250123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+F +   L  H+r+H
  Pavir.3KG008800.1.p 228 HQCRKCHKVFATGVALGGHMRVH 250
                          79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-4161191IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.5E-5165192No hitNo description
SMARTSM003550.0084168190IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.91168195IPR007087Zinc finger, C2H2
PfamPF139121.8E-4168191IPR007087Zinc finger, C2H2
PROSITE patternPS000280170190IPR007087Zinc finger, C2H2
SuperFamilySSF576678.19E-5227255No hitNo description
PfamPF139123.6E-7227251IPR007087Zinc finger, C2H2
SMARTSM003550.016228250IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.866228255IPR007087Zinc finger, C2H2
PROSITE patternPS000280230250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MADSSSSSLP PRRRLPDDDH HLEEGQFVPT GAACQQSSHT DHHDDAHPPH SHYRRLSLDE  60
LLSLGRGDAL PSCDSDGTIS DDRGNPSPVS VFRAQPNRQP TGGKLFSAAS GPLMAAQSSH  120
SNVSVSGDST SSAHAAAAVH RLPPPAAQPR SRHVVVPRRA AHRPQREYTC KFCGKSYTSH  180
QALGGHVAKH KSMQREAEAA AVAGMAMPIQ DGAALRRARR AAEAAPHHQC RKCHKVFATG  240
VALGGHMRVH YTGPPIVPAR NKNNSKKQGL APLLAVQDVA VAALPPPTGL SLALSIKAEE  300
APSAAPAGAG RVVVRLFGID ISPKAQAAPL LEQQCSGTIE DFSVAGAHQQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG008800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022684312.18e-84zinc finger protein GLI4-like
TrEMBLA0A3L6Q2021e-123A0A3L6Q202_PANMI; Uncharacterized protein
STRINGPavir.J23731.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18437610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.11e-10C2H2 family protein