PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG028800.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 142aa    MW: 15517.6 Da    PI: 10.4712
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG028800.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_136.11.4e-1164126163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          eke kr rr   NRe+Ar   +R++a  +eL++kv+ L++eN++ kke +   ke+ +lk  +
  Pavir.3KG028800.3.p  64 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSSENETIKKEKDLVMKEYLSLKETN 126
                          89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003387.7E-1364128IPR004827Basic-leucine zipper domain
PfamPF001702.3E-1064127IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.23166129IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.7E-668124No hitNo description
SuperFamilySSF579591.21E-768124No hitNo description
CDDcd147025.53E-1069119No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MTDDEEMAST RLSLQLGGVG IQSSSCSSGG SNAGRPSSRQ PAPAHAAAPA THGPRPRHML  60
TEAEKEAKRL RRVLANRESA RQTILRRQAI RDELARKVAD LSSENETIKK EKDLVMKEYL  120
SLKETNKQLK AQAHDLSLSL F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG028800.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809461.18e-77light-inducible protein CPRF2-like
TrEMBLA0A2S3H5Z72e-75A0A2S3H5Z7_9POAL; Uncharacterized protein
TrEMBLA0A2T7E5992e-75A0A2T7E599_9POAL; Uncharacterized protein
STRINGPavir.Ca00162.1.p6e-98(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19490.13e-18bZIP family protein