PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG030600.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 479aa MW: 52011.2 Da PI: 7.0277

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG030600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.6	8.4e-11	175	203	6	34
HHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeek 34 rr+++NReAAr+sR+RKka+i++Le Pavir.3KG030600.2.p 175 IIRRLAQNREAARKSRLRKKAYIQQLESS 203 579***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	6.4E-8	170	215	No hit	No description
SMART	SM00338	1.6E-6	170	252	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.829	172	216	IPR004827	Basic-leucine zipper domain
CDD	cd14708	1.77E-20	174	226	No hit	No description
SuperFamily	SSF57959	7.47E-7	174	209	No hit	No description
Pfam	PF00170	5.9E-8	174	207	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	177	192	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.6E-29	254	327	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence Send to blast
MGETSSSTSH SRQDPSLLGY GFQGAIANSP PANFFDQGGG TYFGELEEAL MHQVASLRRT 60 QQAATTSTAH HGDTKPFPTA AATAATATAR PPPTLDIFPA WPMRSAHTPK GSNLTADSTD 120 DSESSSRNNS NHSDQHGVAA NMASQFDQVS QQQIQHKNMS TSSTPKTGKT LDPKIIRRLA 180 QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDMQRARSQ GLFLGGAPGA NTSSGAGMFD 240 VEYARWLDEN GRRMAELHGA LHAHLPDGDL RAIVDDTLTH HDELFQLKAV AAKSDVFHLI 300 TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LDPLTEQQLV GICNLQQSSQ QAEEALSQGL 360 EQLHQSLADT MAGGSLIGDA NMSFMGQMAA ALGKLANLEG FVIQADNLRQ QTLHQMHRIL 420 TVRQAARCFL AIGEYHNRLR ALSSLWASRP REILVADEGN CGEISIAAQP SQSQFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence Send to blast

MGETSSSTSH SRQDPSLLGY GFQGAIANSP PANFFDQGGG TYFGELEEAL MHQVASLRRT  60
QQAATTSTAH HGDTKPFPTA AATAATATAR PPPTLDIFPA WPMRSAHTPK GSNLTADSTD  120
DSESSSRNNS NHSDQHGVAA NMASQFDQVS QQQIQHKNMS TSSTPKTGKT LDPKIIRRLA  180
QNREAARKSR LRKKAYIQQL ESSKLKLAQM EQDMQRARSQ GLFLGGAPGA NTSSGAGMFD  240
VEYARWLDEN GRRMAELHGA LHAHLPDGDL RAIVDDTLTH HDELFQLKAV AAKSDVFHLI  300
TGVWTTPAER CFLWMGGFRP SDLLKTLLPQ LDPLTEQQLV GICNLQQSSQ QAEEALSQGL  360
EQLHQSLADT MAGGSLIGDA NMSFMGQMAA ALGKLANLEG FVIQADNLRQ QTLHQMHRIL  420
TVRQAARCFL AIGEYHNRLR ALSSLWASRP REILVADEGN CGEISIAAQP SQSQFSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	1e-173	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG030600.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809311.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2T7E565	0.0	A0A2T7E565_9POAL; Uncharacterized protein
STRING	Sb05g003240.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-132	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG030600.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]