PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG030600.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 387aa MW: 42519.8 Da PI: 6.8882

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG030600.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34	6.4e-11	83	111	6	34
HHHCHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 6 rerrkqkNReAArrsRqRKkaeieeLeek 34 rr+++NReAAr+sR+RKka+i++Le Pavir.3KG030600.3.p 83 IIRRLAQNREAARKSRLRKKAYIQQLESS 111 579***********************974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.6E-6	78	160	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.7E-8	78	123	No hit	No description
PROSITE profile	PS50217	8.829	80	124	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.5E-8	82	115	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.55E-7	84	125	No hit	No description
PROSITE pattern	PS00036	0	85	100	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.5E-29	162	235	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MVQQEHRFAT APLFAFAEGS NLTADSTDDS ESSSRNNSNH SDQHGVAANM ASQFDQVSQQ 60 QIQHKNMSTS STPKTGKTLD PKIIRRLAQN REAARKSRLR KKAYIQQLES SKLKLAQMEQ 120 DMQRARSQGL FLGGAPGANT SSGAGMFDVE YARWLDENGR RMAELHGALH AHLPDGDLRA 180 IVDDTLTHHD ELFQLKAVAA KSDVFHLITG VWTTPAERCF LWMGGFRPSD LLKTLLPQLD 240 PLTEQQLVGI CNLQQSSQQA EEALSQGLEQ LHQSLADTMA GGSLIGDANM SFMGQMAAAL 300 GKLANLEGFV IQADNLRQQT LHQMHRILTV RQAARCFLAI GEYHNRLRAL SSLWASRPRE 360 ILVADEGNCG EISIAAQPSQ SQFSAF*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MVQQEHRFAT APLFAFAEGS NLTADSTDDS ESSSRNNSNH SDQHGVAANM ASQFDQVSQQ  60
QIQHKNMSTS STPKTGKTLD PKIIRRLAQN REAARKSRLR KKAYIQQLES SKLKLAQMEQ  120
DMQRARSQGL FLGGAPGANT SSGAGMFDVE YARWLDENGR RMAELHGALH AHLPDGDLRA  180
IVDDTLTHHD ELFQLKAVAA KSDVFHLITG VWTTPAERCF LWMGGFRPSD LLKTLLPQLD  240
PLTEQQLVGI CNLQQSSQQA EEALSQGLEQ LHQSLADTMA GGSLIGDANM SFMGQMAAAL  300
GKLANLEGFV IQADNLRQQT LHQMHRILTV RQAARCFLAI GEYHNRLRAL SSLWASRPRE  360
ILVADEGNCG EISIAAQPSQ SQFSAF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.5607	4e-74	callus\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG030600.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF111321	0.0	KF111321.1 Zea mays cultivar B73 basic leucine zipper transcription factor mRNA, complete cds, alternatively spliced.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809311.1	0.0	transcription factor TGAL4-like isoform X2
Swissprot	Q53Q70	0.0	TGAL4_ORYSJ; Transcription factor TGAL4
TrEMBL	A0A2T7E565	0.0	A0A2T7E565_9POAL; Uncharacterized protein
STRING	Pavir.J34096.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-132	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG030600.3.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]