PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG033600.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Protein Properties

Length: 331aa MW: 36530.8 Da PI: 9.3295

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG033600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	93.7	1.3e-29	99	189	1	86
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k ltpsdv+k++rlv+pk++ae++ g+ +e++ l +ede g+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F+++ Pavir.3KG033600.1.p 99 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGEGSEKGLLLAFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVRFERV 188 99**************************9555568889**********************************************66 PP S CS B3 86 g 86 + Pavir.3KG033600.1.p 189 R 189 4 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.9E-40	93	212	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.84E-30	96	191	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.54E-28	97	191	No hit	No description
Pfam	PF02362	1.0E-26	99	189	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.479	99	205	IPR003340	B3 DNA binding domain
SMART	SM01019	5.2E-23	99	205	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAGHDICMPP STQHNTSPHH HWSTASLLPL SPLPNFSGRA RQELKNLSSP TSSSRLRSSR 60 SAMAMHHLAQ GHPQAWPWGV TMYTNLHYHQ HQYEREHLFE KPLTPSDVGK LNRLVIPKQH 120 AERYFPLGGG EGSEKGLLLA FEDEAGKPWR FRYSYWTSSQ SYVLTKGWSR YVKEKRLDAG 180 DVVRFERVRG GLGVGDRLFI GCRRRGESAA PAPTPPPPVR SPAPALNAGE QQPWSPRCYS 240 TSGSSYPTSP ASPYAYHSDM THAGEADAKS SGTPTAPSRK LRLFGVNLDC GPEPEPEAEA 300 ATAAMYGYLH QSPYAAVSTV PNYWGLNREN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	5e-51	94	205	3	113	B3 domain-containing transcription factor NGA1
5os9_B	5e-51	94	205	3	113	B3 domain-containing transcription factor NGA1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.10153	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG033600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025804861.1	1e-167	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	1e-122	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	A0A2S3H5Z8	1e-165	A0A2S3H5Z8_9POAL; Uncharacterized protein
TrEMBL	A0A2T7E5A8	1e-165	A0A2T7E5A8_9POAL; Uncharacterized protein
STRING	Pavir.Ca00165.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	2e-44	B3 family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG033600.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]