PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG036500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family FAR1
Protein Properties Length: 824aa    MW: 94426.8 Da    PI: 5.4632
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG036500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR177.62.4e-24103189290
                 FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                           Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ +  +++ +++etrt+Cka+++ + +++g+w+v+++  eHnHel+
  Pavir.3KG036500.1.p 103 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 189
                          7*****************************************9988..9999***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.2E-22103189IPR004330FAR1 DNA binding domain
PfamPF105511.5E-27301395IPR018289MULE transposase domain
PROSITE profilePS509669.619583619IPR007527Zinc finger, SWIM-type
PfamPF044344.2E-4587616IPR007527Zinc finger, SWIM-type
SMARTSM005754.0E-5594621IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 824 aa     Download sequence    Send to blast
MGNDSTVMEG TSIAIEIDGE AICLDSVGDD EQEAQENGEM QQIIYSAENG EQLAFNNQEQ  60
GREEEPTGNE EDREHSSIIP SREELTEELR NKTAYSEEEA YRLYCDYGHR MGFSVRKGKQ  120
YYFTGTKTIR TKDYYCSKEG LKDDEQLTEA NFNKPETRTN CKAMVRFRVD SEGQWRVIQI  180
IPEHNHELVR PEEIHLLRSV RTLSVPKPGV LNAMVNAEIQ AMHGSLHINE DGAECHSQLS  240
IRSYTLLEPE DCEALVGYFK RRANEQGMFY WDVEVDQEGR MANFFWRDGR SRIDYDSFGD  300
VVMFDTSHRT NKYNMICAPF VGVNQHRQNV MFGCAFLLDE SPASYEWLFK SFLEAMGGHP  360
PKTIFTDQNE SISKVIEDVL PGTRHCLCQR FIEKNLQSYL GTISDSGTFH SMLSKCMREC  420
ESEAEFDEAW AMMHHEYNMQ KHQWLNDLYQ QRHKWCTALH KDAFDGGIES LDRNEGSNNV  480
LSSIDDESTS LATVVHELDK TVGIWRKNES LEDIQCNQAA PECTVKHTRI LQHAAEVYTH  540
KVYKSLEKDF LDGCGATSYQ EVQCDETLYR LEFILQRSGP KVWVVFLNTS TLDLSCSCKK  600
FETMGVLCSH ALNALSLKNV DRIPEKYIFK RWTKYVRKGT YPFPVDGFAE QDHSYALMYR  660
NTAMRFVYDL LMKSKSHQNT RKLILDVLES GEKSLESVCE LKRLHMHPLG KEKDGNRVEK  720
RKKKSTKQEK HSRNVKQVVL PQPAGLVFVD PPNQDQYYAA EDIASNSSIG RPFFYQGYPA  780
TGVSASQIQG HTNMQSVPQC VSQEYSAYAA VQPPSQFGGD RNF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.227000.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG036500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808353.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2T7E5E60.0A0A2T7E5E6_9POAL; Uncharacterized protein
STRINGPavir.Ca00202.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-84FAR1-related sequence 5