PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG036500.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 817aa MW: 93722 Da PI: 5.5294

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG036500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.4e-24	96	182	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ + +++ +++etrt+Cka+++ + +++g+w+v+++ eHnHel+ Pavir.3KG036500.2.p 96 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 182 7***************************************9988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-22	96	182	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-27	294	388	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.619	576	612	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-4	580	609	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-5	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MEGTSIAIEI DGEAICLDSV GDDEQEAQEN GEMQQIIYSA ENGEQLAFNN QEQGREEEPT 60 GNEEDREHSS IIPSREELTE ELRNKTAYSE EEAYRLYCDY GHRMGFSVRK GKQYYFTGTK 120 TIRTKDYYCS KEGLKDDEQL TEANFNKPET RTNCKAMVRF RVDSEGQWRV IQIIPEHNHE 180 LVRPEEIHLL RSVRTLSVPK PGVLNAMVNA EIQAMHGSLH INEDGAECHS QLSIRSYTLL 240 EPEDCEALVG YFKRRANEQG MFYWDVEVDQ EGRMANFFWR DGRSRIDYDS FGDVVMFDTS 300 HRTNKYNMIC APFVGVNQHR QNVMFGCAFL LDESPASYEW LFKSFLEAMG GHPPKTIFTD 360 QNESISKVIE DVLPGTRHCL CQRFIEKNLQ SYLGTISDSG TFHSMLSKCM RECESEAEFD 420 EAWAMMHHEY NMQKHQWLND LYQQRHKWCT ALHKDAFDGG IESLDRNEGS NNVLSSIDDE 480 STSLATVVHE LDKTVGIWRK NESLEDIQCN QAAPECTVKH TRILQHAAEV YTHKVYKSLE 540 KDFLDGCGAT SYQEVQCDET LYRLEFILQR SGPKVWVVFL NTSTLDLSCS CKKFETMGVL 600 CSHALNALSL KNVDRIPEKY IFKRWTKYVR KGTYPFPVDG FAEQDHSYAL MYRNTAMRFV 660 YDLLMKSKSH QNTRKLILDV LESGEKSLES VCELKRLHMH PLGKEKDGNR VEKRKKKSTK 720 QEKHSRNVKQ VVLPQPAGLV FVDPPNQDQY YAAEDIASNS SIGRPFFYQG YPATGVSASQ 780 IQGHTNMQSV PQCVSQEYSA YAAVQPPSQF GGDRNF*

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MEGTSIAIEI DGEAICLDSV GDDEQEAQEN GEMQQIIYSA ENGEQLAFNN QEQGREEEPT  60
GNEEDREHSS IIPSREELTE ELRNKTAYSE EEAYRLYCDY GHRMGFSVRK GKQYYFTGTK  120
TIRTKDYYCS KEGLKDDEQL TEANFNKPET RTNCKAMVRF RVDSEGQWRV IQIIPEHNHE  180
LVRPEEIHLL RSVRTLSVPK PGVLNAMVNA EIQAMHGSLH INEDGAECHS QLSIRSYTLL  240
EPEDCEALVG YFKRRANEQG MFYWDVEVDQ EGRMANFFWR DGRSRIDYDS FGDVVMFDTS  300
HRTNKYNMIC APFVGVNQHR QNVMFGCAFL LDESPASYEW LFKSFLEAMG GHPPKTIFTD  360
QNESISKVIE DVLPGTRHCL CQRFIEKNLQ SYLGTISDSG TFHSMLSKCM RECESEAEFD  420
EAWAMMHHEY NMQKHQWLND LYQQRHKWCT ALHKDAFDGG IESLDRNEGS NNVLSSIDDE  480
STSLATVVHE LDKTVGIWRK NESLEDIQCN QAAPECTVKH TRILQHAAEV YTHKVYKSLE  540
KDFLDGCGAT SYQEVQCDET LYRLEFILQR SGPKVWVVFL NTSTLDLSCS CKKFETMGVL  600
CSHALNALSL KNVDRIPEKY IFKRWTKYVR KGTYPFPVDG FAEQDHSYAL MYRNTAMRFV  660
YDLLMKSKSH QNTRKLILDV LESGEKSLES VCELKRLHMH PLGKEKDGNR VEKRKKKSTK  720
QEKHSRNVKQ VVLPQPAGLV FVDPPNQDQY YAAEDIASNS SIGRPFFYQG YPATGVSASQ  780
IQGHTNMQSV PQCVSQEYSA YAAVQPPSQF GGDRNF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.22700	0.0	callus\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG036500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808353.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7E5E6	0.0	A0A2T7E5E6_9POAL; Uncharacterized protein
STRING	Pavir.Ca00202.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-84	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3KG036500.2.p