PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG036500.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 818aa MW: 93853.2 Da PI: 5.5294

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG036500.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.6	2.4e-24	97	183	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ + +++ +++etrt+Cka+++ + +++g+w+v+++ eHnHel+ Pavir.3KG036500.3.p 97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPETRTNCKAMVRFRVDSEGQWRVIQIIPEHNHELV 183 7***************************************9988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-22	97	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.5E-27	295	389	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.619	577	613	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	4.2E-4	581	610	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.0E-5	588	615	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MMEGTSIAIE IDGEAICLDS VGDDEQEAQE NGEMQQIIYS AENGEQLAFN NQEQGREEEP 60 TGNEEDREHS SIIPSREELT EELRNKTAYS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT 120 KTIRTKDYYC SKEGLKDDEQ LTEANFNKPE TRTNCKAMVR FRVDSEGQWR VIQIIPEHNH 180 ELVRPEEIHL LRSVRTLSVP KPGVLNAMVN AEIQAMHGSL HINEDGAECH SQLSIRSYTL 240 LEPEDCEALV GYFKRRANEQ GMFYWDVEVD QEGRMANFFW RDGRSRIDYD SFGDVVMFDT 300 SHRTNKYNMI CAPFVGVNQH RQNVMFGCAF LLDESPASYE WLFKSFLEAM GGHPPKTIFT 360 DQNESISKVI EDVLPGTRHC LCQRFIEKNL QSYLGTISDS GTFHSMLSKC MRECESEAEF 420 DEAWAMMHHE YNMQKHQWLN DLYQQRHKWC TALHKDAFDG GIESLDRNEG SNNVLSSIDD 480 ESTSLATVVH ELDKTVGIWR KNESLEDIQC NQAAPECTVK HTRILQHAAE VYTHKVYKSL 540 EKDFLDGCGA TSYQEVQCDE TLYRLEFILQ RSGPKVWVVF LNTSTLDLSC SCKKFETMGV 600 LCSHALNALS LKNVDRIPEK YIFKRWTKYV RKGTYPFPVD GFAEQDHSYA LMYRNTAMRF 660 VYDLLMKSKS HQNTRKLILD VLESGEKSLE SVCELKRLHM HPLGKEKDGN RVEKRKKKST 720 KQEKHSRNVK QVVLPQPAGL VFVDPPNQDQ YYAAEDIASN SSIGRPFFYQ GYPATGVSAS 780 QIQGHTNMQS VPQCVSQEYS AYAAVQPPSQ FGGDRNF*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MMEGTSIAIE IDGEAICLDS VGDDEQEAQE NGEMQQIIYS AENGEQLAFN NQEQGREEEP  60
TGNEEDREHS SIIPSREELT EELRNKTAYS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT  120
KTIRTKDYYC SKEGLKDDEQ LTEANFNKPE TRTNCKAMVR FRVDSEGQWR VIQIIPEHNH  180
ELVRPEEIHL LRSVRTLSVP KPGVLNAMVN AEIQAMHGSL HINEDGAECH SQLSIRSYTL  240
LEPEDCEALV GYFKRRANEQ GMFYWDVEVD QEGRMANFFW RDGRSRIDYD SFGDVVMFDT  300
SHRTNKYNMI CAPFVGVNQH RQNVMFGCAF LLDESPASYE WLFKSFLEAM GGHPPKTIFT  360
DQNESISKVI EDVLPGTRHC LCQRFIEKNL QSYLGTISDS GTFHSMLSKC MRECESEAEF  420
DEAWAMMHHE YNMQKHQWLN DLYQQRHKWC TALHKDAFDG GIESLDRNEG SNNVLSSIDD  480
ESTSLATVVH ELDKTVGIWR KNESLEDIQC NQAAPECTVK HTRILQHAAE VYTHKVYKSL  540
EKDFLDGCGA TSYQEVQCDE TLYRLEFILQ RSGPKVWVVF LNTSTLDLSC SCKKFETMGV  600
LCSHALNALS LKNVDRIPEK YIFKRWTKYV RKGTYPFPVD GFAEQDHSYA LMYRNTAMRF  660
VYDLLMKSKS HQNTRKLILD VLESGEKSLE SVCELKRLHM HPLGKEKDGN RVEKRKKKST  720
KQEKHSRNVK QVVLPQPAGL VFVDPPNQDQ YYAAEDIASN SSIGRPFFYQ GYPATGVSAS  780
QIQGHTNMQS VPQCVSQEYS AYAAVQPPSQ FGGDRNF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pvr.22700	0.0	callus\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG036500.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025808353.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T7E5E6	0.0	A0A2T7E5E6_9POAL; Uncharacterized protein
STRING	Pavir.Ca00202.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-84	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3KG036500.3.p