PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG039000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Trihelix
Protein Properties Length: 443aa    MW: 50377.9 Da    PI: 6.5957
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG039000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.93.1e-24118214186
             trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 
                          +Wt+++v++Li+a ++++e+ ++++          +kk++W+++sk+m erg+ +sp+qC++k+++lnkryk++++  +++ t++ + + 
  Pavir.3KG039000.1.p 118 KWTDSMVKLLITAASYTGEDPGADSgggrrncammQKKGKWKAISKVMGERGCLVSPQQCEDKFNDLNKRYKRLTDLLGRGtTCRIVANP 207
                          7*********************9877778888999*********************************************9679999999 PP

             trihelix  80 pyfdqle 86 
                           ++d+++
  Pavir.3KG039000.1.p 208 ELLDSMT 214
                          9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.6E-18116240No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MEGNNLPSGS LMQGTPYGSL DLHHNHMPMH APNSGNQGFN HPQMASNFPI HLNQDTDPDQ  60
LTEFQFGEHG KANHHHHHHH HQQTKNSMSD DEEHGVHEDA TDSQTGKGKK GSPWHRMKWT  120
DSMVKLLITA ASYTGEDPGA DSGGGRRNCA MMQKKGKWKA ISKVMGERGC LVSPQQCEDK  180
FNDLNKRYKR LTDLLGRGTT CRIVANPELL DSMTSLSDKT KDDARKILSS KHLFYEEMCS  240
YHNNNRFSLP EDPALQHSLQ LALKCKDEHD ARRRTSGDAD EDDQSPDTDY EEENDDEHPA  300
VHVNKGTLPM HKRMRYMADQ EDVGFGNSSS SHDCSRRSDP HSIAVDINKV FPDGTNLALV  360
QKDLATQSAE IEKQRMEIEA EALELAKQRH KWERFSKKKD RELEKMRLEN EQMKIENRRL  420
ELEVRHKELD LELRLKGNGS QA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.92640.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG039000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9521980.0EU952198.1 Zea mays clone 1220044 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807496.10.0uncharacterized protein LOC112885984
TrEMBLA0A2S3H5Y50.0A0A2S3H5Y5_9POAL; Uncharacterized protein
STRINGPavir.J39826.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29203886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-106sequence-specific DNA binding transcription factors