PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG048800.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GRAS

Protein Properties

Length: 148aa MW: 16043.5 Da PI: 4.6244

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG048800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	68.3	1.5e-21	2	144	226	373
GRAS 226 evLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsleaklpres..eerikvErellgreivnvvacegaerrerhe 310 ++L vk l+Pk+v+++eqe +d++ ++F+e f+e ++++a+++sle+ + vE+e lg+ i+++v + + Pavir.3KG048800.1.p 2 QLLGSVKILRPKLVILIEQEpfrIDRGLAPFAEFFCEVQQHFAAMLESLESCFRDGGygACLGPVEKETLGPMIEDAVRQYEPL----AG 87 5899**************98889999********************977767777889**********988776....22 PP GRAS 311 tlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 + e GF++ +ls+++++q k+l ++ +g+ v +e+g l l+W++rpL+svS+W Pavir.3KG048800.1.p 88 -----GAGAELEGFRACELSSFNVAQGKMLAGLFS-RGFGVAQEEGRLALCWNSRPLTSVSVW 144 .....3456889******************9.************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03514	5.1E-19	2	144	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MQLLGSVKIL RPKLVILIEQ EPFRIDRGLA PFAEFFCEVQ QHFAAMLESL ESCFRDGGYG 60 ACLGPVEKET LGPMIEDAVR QYEPLAGGAG AELEGFRACE LSSFNVAQGK MLAGLFSRGF 120 GVAQEEGRLA LCWNSRPLTS VSVWSPV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG048800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025809510.1	2e-93	nodulation-signaling pathway 2 protein-like isoform X1
Refseq	XP_025809511.1	1e-93	nodulation-signaling pathway 2 protein-like isoform X2
TrEMBL	A0A3L6R6F6	2e-92	A0A3L6R6F6_PANMI; Nodulation-signaling pathway 2 protein-like
STRING	Pavir.Ca00212.1.p	2e-99	(Panicum virgatum)
STRING	Pavir.Ca00290.1.p	1e-102	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP17114	11	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03450.1	2e-09	RGA-like 2

Link Out ? help Back to Top
Phytozome	Pavir.3KG048800.1.p