PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG052600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 501aa    MW: 54472.9 Da    PI: 6.3805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG052600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM30.41.1e-0991541127
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya.....tgkrknr.at 78 
                          lppG+ F+P+ ee v +yL++  ++   ++ +++i +v+    +     +     ++  +  +w   ++  +           r++r ++
  Pavir.3KG052600.1.p   9 LPPGVYFNPSAEECVRDYLRPWRNAGVRPAtDRIIVDVNRQARHAAAGAAagvlaRLPLQVYKWLMLTHCVRVCGgkkgrATARARRnVA 98 
                          79*******************977776555145699997766666554423444433335567755555544443221113447777667 PP

                  NAM  79 ksgyWkatgkdkevlsk..kgel......vglkktLvfykg.rapkgektdWvmheyr 127
                          + g Wk   + k v ++  +  +         ++t  fy g  + k +kt W+m+e +
  Pavir.3KG052600.1.p  99 TGGNWKVEQRAKGVAEHagG--EddpsggGDRRRTNGFYLGsGKGKCVKTPWLMEELT 154
                          79************998641..335666567899999**774566789*******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-96160IPR003441NAC domain
PROSITE profilePS5100515.5099175IPR003441NAC domain
PfamPF023655.0E-710153IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MAAPFLQPLP PGVYFNPSAE ECVRDYLRPW RNAGVRPATD RIIVDVNRQA RHAAAGAAAG  60
VLARLPLQVY KWLMLTHCVR VCGGKKGRAT ARARRNVATG GNWKVEQRAK GVAEHAGGED  120
DPSGGGDRRR TNGFYLGSGK GKCVKTPWLM EELTTEEDEA DAAAGGWRGE TSRREKLAIF  180
GEDGVPFDRD GKAKTVIMVD LPADLFDAIA ESVYGAQGPA PPPPLPPPAP RVFGLQQQCQ  240
PAAPPPLRVQ YGQAALGHGH GHAVLPPLVH AHQHGHGWAH AHPGFLGYQH GQGAPCRIQG  300
GPGQYCAVEV QPRWRHVVDL YQIQGASPGL SGYYYNRQDE ALLYQYASPS FVRLDPGEEE  360
EVIRTQKKKP RLEYDSQSHG GGHSDKSSCV VQASTPQQEQ GVADAKVFQE SAEHVAKPSP  420
PQPQEIPGTA TGPPAESRRD HDRDFIADVD LQEEQLVDHV PDILMRGGDE PPLQLGFDEF  480
PLEDFMKDVP DFWRQPGAPD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG052600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A3L6SXD60.0A0A3L6SXD6_PANMI; Uncharacterized protein
STRINGPavir.Ca00369.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP135701724