PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG057200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 230aa    MW: 24777.8 Da    PI: 10.1371
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG057200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-174387147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r ++T  E+e+l++a++ +G++ W++I+r ++ gRt++ +k++w+ +
  Pavir.3KG057200.1.p 43 RRPFTVAEEERLLQAHRAHGNR-WALISRLFP-GRTDNAVKNHWHVV 87
                         679*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500903.926137IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.7E-82550IPR009057Homeodomain-like
SuperFamilySSF466892.31E-212691IPR009057Homeodomain-like
PROSITE profilePS5129425.5653892IPR017930Myb domain
SMARTSM007173.8E-154290IPR001005SANT/Myb domain
PfamPF002491.5E-144386IPR001005SANT/Myb domain
CDDcd001672.55E-124588No hitNo description
Gene3DG3DSA:1.10.10.607.1E-175186IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MMPINRWNRT TIDASCAPGQ LIDLAGKSCR LRWFNQLDPR INRRPFTVAE EERLLQAHRA  60
HGNRWALISR LFPGRTDNAV KNHWHVVMAR RRRSHQRSAG GGTHLAAAPG TGCSPPPRLP  120
PFQCFHFGAP PPASAKTTTT GNLCFARPGS GPSSLVSSSS GTFSVRNCHV ANNFAFSSPR  180
EAAAAAPEDD HRHGMVKDEH AGNDDDEDGG GAAATKKDVP FIDFLGVGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-18119131107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19197RRSHQRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG057200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9724983e-82EU972498.1 Zea mays clone 382267 myb-like DNA-binding domain containing protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809406.13e-98transcription factor CSA-like
TrEMBLA0A3L6RBZ81e-105A0A3L6RBZ8_PANMI; Transcription factor MYB44-like
STRINGPavir.Cb01957.1.p3e-99(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29438260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-38myb domain protein 56