PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG062200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NF-YC

Protein Properties

Length: 211aa MW: 23823.7 Da PI: 5.0411

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG062200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	23.8	9.4e-08	28	76	4	49
NF-YC 4 sfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllsk 49 fw+k+ e+ +df++ e+P++r+kk++ a + m+s ++P +l+k Pavir.3KG062200.1.p 28 DFWKKKqeeAEEIKDFHEYEFPMSRLKKVVCAKKGKMMMSFDTPSFLTK 76 5999874556777889999**************************9988 PP

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MKETDHPIDI HPSSKGSLPE SEQRLKEDFW KKKQEEAEEI KDFHEYEFPM SRLKKVVCAK 60 KGKMMMSFDT PSFLTKRANN SGPNAIGIIE SNHIKPKVAQ IRSNIDAHIK TNAISGINIE 120 ATINTNDVQH QHGSLEVVSA TKLSDDNKNI NWDEVDMADD SLLIEFWEDV MMKEDITPQE 180 VPSHVPEIEG SDHGPYLIDD IISSASRRRS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG062200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2T7E611	1e-73	A0A2T7E611_9POAL; Uncharacterized protein
STRING	Pavir.Ca00330.1.p	2e-89	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9174	21	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	9e-06	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	Pavir.3KG062200.1.p