PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG068700.3.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 341aa MW: 36281.8 Da PI: 4.604

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG068700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	38.4	2.4e-12	295	330	3	38
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRq 38 ++++l+dl++yF+lp+++AA+ Lgvc+TvLK + R+ Pavir.3KG068700.3.p 295 SKLQLSDLARYFHLPMTQAARLLGVCATVLKTTSRR 330 689****************************99887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02042	2.4E-10	297	330	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MADGHGEATD WEEGPYDPLL VQDDLDDVMH LLDMPAVVLD PAPLAVAQQD NLQEWPPANY 60 LNNDSVDSRA PTHDAAVAGD RPSTSSTQYA GAGTSATAGA HDENALLDCS GCHVLREVLH 120 SNGLEATKLC VHGNSGVFYH ATLEVYRINS EGMATALTHQ SYIDFRGLDY MWVKHYLTGY 180 AQQRAGGGYT VVHDSISAFH DALSVSMNYD GDGGNADGDD HRREGMEVAA AVGNGGCGGD 240 QDDGAVDAEQ PLIEPGDVPA TAGPSEPSAS NDHQERREVR KVGRSAIAIQ RQRASKLQLS 300 DLARYFHLPM TQAARLLGVC ATVLKTTSRR SKASTTILPS *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG068700.3.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021321666.1	1e-83	uncharacterized protein LOC8084238
TrEMBL	A0A3L6T1V2	1e-158	A0A3L6T1V2_PANMI; Uncharacterized protein
STRING	Pavir.Ca00391.1.p	0.0	(Panicum virgatum)

Link Out ? help Back to Top
Phytozome	Pavir.3KG068700.3.p