PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG076500.2.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 837aa MW: 93016.2 Da PI: 7.3326

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG076500.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.7	4.1e-27	493	543	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+ sle++++yF +++k+AAk+Lgvc+T++KriCRq+GI+RWP+R+i+++ Pavir.3KG076500.2.p 493 EKTFSLEVIQHYFTGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRQISKV 543 8999********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.961	482	563	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-23	496	543	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-23	732	827	No hit	No description
SMART	SM00666	4.1E-25	742	824	IPR000270	PB1 domain
PROSITE profile	PS51745	18.27	742	824	IPR000270	PB1 domain
CDD	cd06407	1.47E-32	743	823	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.5E-25	743	823	No hit	No description
Pfam	PF00564	4.1E-17	743	823	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 837 aa Download sequence Send to blast
MTKKGEPING KCQVHLSMVD DYSDSSYFLK ERLTLALRYF KESTNQHLLV QVWVPIRKGD 60 RYMLSTSGQP FVLDQQSIGL LQYRAVSMMY MFSVDGDNVK ELGLPGRVYK QKVPEWTPSV 120 QYYSSTEYAR LNHAISYNVH GTVALPVFDP STKSCIAVVE LIMTSKKVNY ASEVGKVSKA 180 LEAVDLKSTE VVEHPYVQTQ IFNEGHQAAL VEMLEVLTVI CEELKLPLAQ TWVPCKYQNL 240 LVPCGGVKKS SFNIHGSCAQ ELCMLTSDVA FHVIDAHMWG FRDACVEHHL QKGQGVSGKA 300 CILRRPCFSK DVTRFSKLEY PLVHYARMFG LAGCFSVCMQ SAYTGNDDYV LEFFLPPDCR 360 EDAEKMVLLE SILALLRQHL RSLHVATDEV SHEELQVDAI TVIDNNETKD EHAQHLNFQV 420 GIHASHESNM HGVHESDSQK RIASPEYEMC LSPENSTKCN GKLFVGPNGG CTSDSLLPNN 480 NSKHHGRRRG KAEKTFSLEV IQHYFTGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRQI 540 SKVNRSISKL KKVIESVEGS ESAFTLTSIT GPLPVPFTPS NPTNIKNGRQ TEVTDLSIPS 600 VQENRGSSSQ IKLLENDDRL GMLIPQRSFL ANISKQIERE KALNLRSSSG EPSTNSGTSE 660 DSCLGSPANR TFVSLLMEPQ QNMRKPERFT KEPFQTQDLL LPGLFVNGSG SSKNCKNHIT 720 AAVNEPAVVP PGSLMSVHNS GIVTVKARYK EDLLRFRFPC SASIIDLKDE VAKRIQIDVG 780 VFNIKYLDDD HEWVKLTCDA DLEECIEISR LSGSNVLRLL VSDIAPILGS SCGSTG*

Sequence ? help Back to Top

Protein Sequence Length: 837 aa Download sequence Send to blast

MTKKGEPING KCQVHLSMVD DYSDSSYFLK ERLTLALRYF KESTNQHLLV QVWVPIRKGD  60
RYMLSTSGQP FVLDQQSIGL LQYRAVSMMY MFSVDGDNVK ELGLPGRVYK QKVPEWTPSV  120
QYYSSTEYAR LNHAISYNVH GTVALPVFDP STKSCIAVVE LIMTSKKVNY ASEVGKVSKA  180
LEAVDLKSTE VVEHPYVQTQ IFNEGHQAAL VEMLEVLTVI CEELKLPLAQ TWVPCKYQNL  240
LVPCGGVKKS SFNIHGSCAQ ELCMLTSDVA FHVIDAHMWG FRDACVEHHL QKGQGVSGKA  300
CILRRPCFSK DVTRFSKLEY PLVHYARMFG LAGCFSVCMQ SAYTGNDDYV LEFFLPPDCR  360
EDAEKMVLLE SILALLRQHL RSLHVATDEV SHEELQVDAI TVIDNNETKD EHAQHLNFQV  420
GIHASHESNM HGVHESDSQK RIASPEYEMC LSPENSTKCN GKLFVGPNGG CTSDSLLPNN  480
NSKHHGRRRG KAEKTFSLEV IQHYFTGSLK NAAKSLGVCP TTMKRICRQH GISRWPSRQI  540
SKVNRSISKL KKVIESVEGS ESAFTLTSIT GPLPVPFTPS NPTNIKNGRQ TEVTDLSIPS  600
VQENRGSSSQ IKLLENDDRL GMLIPQRSFL ANISKQIERE KALNLRSSSG EPSTNSGTSE  660
DSCLGSPANR TFVSLLMEPQ QNMRKPERFT KEPFQTQDLL LPGLFVNGSG SSKNCKNHIT  720
AAVNEPAVVP PGSLMSVHNS GIVTVKARYK EDLLRFRFPC SASIIDLKDE VAKRIQIDVG  780
VFNIKYLDDD HEWVKLTCDA DLEECIEISR LSGSNVLRLL VSDIAPILGS SCGSTG*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG076500.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025805501.1	0.0	protein NLP3-like isoform X1
Swissprot	Q5NB82	0.0	NLP3_ORYSJ; Protein NLP3
TrEMBL	A0A2S3H6V2	0.0	A0A2S3H6V2_9POAL; Uncharacterized protein
STRING	Pavir.Ca00444.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Pavir.3KG076500.2.p