PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG079100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 273aa    MW: 31150.3 Da    PI: 7.042
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG079100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.22.9e-17131194259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT...EEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk...vveitYegeHnhe 59 
                           Dg++WrKYGqK++k+s++ r YYrC+++   +C+++k v++++++++   + +++Y ++H+++
  Pavir.3KG079100.1.p 131 YDGHQWRKYGQKTIKNSKHQRCYYRCAYKheqNCMATKTVQQQEHNTTesvMYTVVYYSHHTCK 194
                          59*************************99899********998876543338899******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182901.7E-19124194IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-20125194IPR003657WRKY domain
SMARTSM007744.3E-28130195IPR003657WRKY domain
PfamPF031062.5E-21132194IPR003657WRKY domain
PROSITE profilePS5081115.411132193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MKLHTRYLPQ SSSTCADEFE HFACDHQPAI NEIVKVQSLV AQLQAIVLPA CEMMADLRSE  60
LVSQLFGNLQ DCTSKAISEL QTHHRAQMID IDRRRLAANI SDCKKVCAKK KSRINSRYGD  120
STSYMTPVPH YDGHQWRKYG QKTIKNSKHQ RCYYRCAYKH EQNCMATKTV QQQEHNTTES  180
VMYTVVYYSH HTCKANTDPA PPHIIETSTP QSAMMSSDSI IGSQEIVSPH TGSHKILENE  240
LATLQWTEDM QELLEKLADV PLDSDIWEMV RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A9e-121321941069OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00066PBMTransfer from AT1G66600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG079100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025805693.10.0probable WRKY transcription factor 63
TrEMBLA0A2T7E6J31e-179A0A2T7E6J3_9POAL; Uncharacterized protein
STRINGPavir.Ca00459.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66600.13e-21ABA overly sensitive mutant 3