PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG091800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family DBB
Protein Properties Length: 323aa    MW: 33586.4 Da    PI: 5.6053
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG091800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.97.3e-07446541
             zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                          C+ +e  e++  C  +++ lC+ C  e H        H++ p
  Pavir.3KG091800.1.p  4 LCSACEAAEASVLCCADDTALCARCDREVHAAnrlagkHQRLP 46
                         7******99*********************6577888998877 PP
2zf-B_box24.26.8e-0863102437
             zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 
                           kC+ ++e  + +fC +++ llC++C ++ H        H
  Pavir.3KG091800.1.p  63 SKCDICQECDAYFFCIEDRALLCRSCDVAVHTAnafvsaH 102
                          6899999977*******************99545566666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.921147IPR000315B-box-type zinc finger
SMARTSM003363.8E-10147IPR000315B-box-type zinc finger
CDDcd000212.19E-7347No hitNo description
PfamPF006433.2E-5447IPR000315B-box-type zinc finger
PROSITE profilePS501199.04460107IPR000315B-box-type zinc finger
SMARTSM003366.1E-1260107IPR000315B-box-type zinc finger
PfamPF006432.5E-66394IPR000315B-box-type zinc finger
CDDcd000212.31E-864107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MKVLCSACEA AEASVLCCAD DTALCARCDR EVHAANRLAG KHQRLPLLAP GGHQSAAAAV  60
APSKCDICQE CDAYFFCIED RALLCRSCDV AVHTANAFVS AHRRFLLTGV QVGQELEDPA  120
PEQPEPPPPP PAKSDPAPPL YGEGDFSWAG GVTGSLADWS AVTANEQFGS PAPRHAEAGS  180
RATPKRSPRA PAFGAGQGRV VGGVMDWPLG EFFRGVSDFN GGFSFGESGT SKADSGKLRG  240
SAGGSPYYRS SSEDRDANEL LGQVPEIKWS VPELPSPPTA SGLHWQHGGG PDSTAFVPDI  300
CSPDSFPTAA AAAAGAKRQR NR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316321KRQRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG091800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808322.10.0B-box zinc finger protein 22-like
TrEMBLA0A2T7E6W10.0A0A2T7E6W1_9POAL; Uncharacterized protein
STRINGPavir.Ca00518.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-47light-regulated zinc finger protein 1