PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG105700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 293aa    MW: 32428.8 Da    PI: 7.5945
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG105700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.73.6e-154895148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd +lv  v+++G ++W+  a+  g++Rt+k+c++rw +yl
  Pavir.3KG105700.1.p 48 KGPWTEEEDAQLVWFVRLFGERRWDFLAKVSGLRRTGKSCRLRWVNYL 95
                         79********************************************97 PP
2Myb_DNA-binding54.23.4e-17101144146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rgr T++E+ l++++++q+G++ W++Iar ++ gRt++++k++w++
  Pavir.3KG105700.1.p 101 RGRITPDEERLILELHAQYGSR-WSRIARSLP-GRTDNEIKNYWRT 144
                          89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.6264395IPR017930Myb domain
SuperFamilySSF466893.03E-2944142IPR009057Homeodomain-like
SMARTSM007173.1E-134797IPR001005SANT/Myb domain
PfamPF002491.4E-134895IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-2049102IPR009057Homeodomain-like
CDDcd001671.13E-95095No hitNo description
PROSITE profilePS5129423.77296150IPR017930Myb domain
SMARTSM007172.9E-15100148IPR001005SANT/Myb domain
PfamPF002494.9E-15101144IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-23103148IPR009057Homeodomain-like
CDDcd001674.14E-11105144No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDHRSMAAAA MSMSMFGRSK QKKDGERSSS SIGNQQAAAA ALPPRMRKGP WTEEEDAQLV  60
WFVRLFGERR WDFLAKVSGL RRTGKSCRLR WVNYLHPGLR RGRITPDEER LILELHAQYG  120
SRWSRIARSL PGRTDNEIKN YWRTRTRKQK ASASSSSTVT TTASCSGSPS SGSGRLTAAS  180
SSAVTESALR ESGGGDDDED AELDEASTTA ASQHRHQQQQ QQESSYTMDQ FWNEIAAADA  240
AASYMVDGWG GAGHPAAAEP PLPSSPVWEY CSDYSLWRID DEEYYKKMLD AS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C3e-272814938158MYB PROTO-ONCOGENE PROTEIN
1h89_C3e-272814938158MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-27271496127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.36360.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG105700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7283601e-103KJ728360.1 Zea mays clone pUT6642 MYB transcription factor (MYB62) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806767.11e-112transcription factor MYB48-like
TrEMBLA0A2S3H7I21e-157A0A2S3H7I2_9POAL; Uncharacterized protein
STRINGPavir.J04129.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.32e-57myb domain protein 59