PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG107200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 187aa    MW: 20126.2 Da    PI: 7.6014
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG107200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.000384264123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C+ C+++F++   L  H  +H
  Pavir.3KG107200.1.p 42 FVCKTCNRTFPSFQALGGHRASH 64
                         89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.45E-840105No hitNo description
PfamPF139126.3E-134166IPR007087Zinc finger, C2H2
SMARTSM003550.0924264IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7234269IPR007087Zinc finger, C2H2
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
SMARTSM003554.883105IPR015880Zinc finger, C2H2-like
PfamPF139121.9E-883107IPR007087Zinc finger, C2H2
PROSITE profilePS501578.64283113IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006979Biological Processresponse to oxidative stress
GO:0009408Biological Processresponse to heat
GO:0009611Biological Processresponse to wounding
GO:0009631Biological Processcold acclimation
GO:0009643Biological Processphotosynthetic acclimation
GO:0010200Biological Processresponse to chitin
GO:0010224Biological Processresponse to UV-B
GO:0042538Biological Processhyperosmotic salinity response
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MKRFAVHEGE MARVLMLMSH GQEPTLPLPL LPVAGRAPER VFVCKTCNRT FPSFQALGGH  60
RASHKKPRLD GDGDPSLAKP KLHGCSICGL EFAIGQALGG HMRRHRAMTG GMPPATTTIV  120
VDKKPDVSII HDHDDGVKRG LWLDLNHPPC DDGFDAEAEC GHNATAGITF HQFLDTGTMA  180
VNCLGY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG107200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126132e-95CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809105.11e-120zinc finger protein ZAT12-like
TrEMBLA0A3L6T0T31e-121A0A3L6T0T3_PANMI; Zinc finger protein ZAT12-like
STRINGPavir.Ca00650.1.p1e-136(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50137157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59820.12e-29C2H2 family protein