PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG107700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 252aa    MW: 27087.5 Da    PI: 5.1935
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG107700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72e-164689146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                         rgr T++E+ l+v++++q+G++ W++Iar ++ gRt++++k++w++
  Pavir.3KG107700.1.p 46 RGRITADEERLIVQLHAQWGSR-WSRIARSLP-GRTDNEIKNFWRT 89
                         899*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.22E-192695IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.9E-102653IPR009057Homeodomain-like
PROSITE profilePS500904.312740IPR017877Myb-like domain
PROSITE profilePS5129422.7234195IPR017930Myb domain
SMARTSM007171.1E-134593IPR001005SANT/Myb domain
PfamPF002496.8E-144689IPR001005SANT/Myb domain
CDDcd001672.78E-115089No hitNo description
Gene3DG3DSA:1.10.10.608.6E-185491IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MRRRGPGAGD EEGPLDGGGG RAAGLRRTGK SCRLRWVNYL HPDLRRGRIT ADEERLIVQL  60
HAQWGSRWSR IARSLPGRTD NEIKNFWRTR TRKKALQERR HNSGGGKTSA SASPLSSATT  120
SSCCPGSPNS GADTQSSSAP PSDDDSALRE GSGGDGGDAE LEEASTAAAA ASQHEEPAAY  180
CCTMDQLWNE IAAADAAASY VLDSWGAGHC YYGAAAEPPP MPSSPVWEYS SDYSLWRIDD  240
EEYYREMLDA S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A9e-17279537105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.88760.0callus| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG107700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281942e-84KJ728194.1 Zea mays clone pUT6468 MYB transcription factor (MYB21) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806457.11e-117LOW QUALITY PROTEIN: transcription factor MYB59-like
TrEMBLA0A3L6RB391e-118A0A3L6RB39_PANMI; Transcription factor MYB59-like
STRINGPavir.Ca00655.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63637169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.22e-35myb domain protein 59