PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG116800.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 269aa    MW: 28332.1 Da    PI: 7.2725
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG116800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.92.3e-201776357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eql +Lee+++   r+ps +++++++++l    +++ ++V++WFqN++a++++
  Pavir.3KG116800.1.p 17 TRWCPTPEQLMILEEMYRGgLRTPSSSQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 76
                         8*****************99*************************************996 PP
2Wus_type_Homeobox1178.4e-381677364
    Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         +tRW+PtpeQ++iLee+y+ GlrtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Pavir.3KG116800.1.p 16 STRWCPTPEQLMILEEMYRGGLRTPSSSQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 77
                         79***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.4E-41481IPR001356Homeobox domain
PfamPF000464.9E-181776IPR001356Homeobox domain
CDDcd000861.27E-51777No hitNo description
SuperFamilySSF466891.37E-101777IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-71876IPR009057Homeodomain-like
PROSITE profilePS500719.9772277IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MPSQQDQPQE PVVAGSTRWC PTPEQLMILE EMYRGGLRTP SSSQIQQITA HLACYGRIEG  60
KNVFYWFQNH KARDRQKLRR RLCMSHHLLS CAQYYAAAHH GHGHGFLAAP PAAPYGCSVF  120
DQAAAGQLLS PTSPTPAAAA AAAAAAAAAA AYGYYYPATA AFSAAAPARR CAGAATPPSP  180
TQLFHYQQVA QAGGEGIAPV EAIGRPEYTL GKLDNFGVAL DEVVSSAAAV DMGLPGFEVA  240
PPVAAFCRPL KTLDLFPGGL KEEQHDVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG116800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-137BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-137KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809937.11e-132putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX11e-135A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.J22602.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.11e-39WOX family protein