PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG119400.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WOX
Protein Properties Length: 259aa    MW: 27487.3 Da    PI: 8.1396
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG119400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.53.1e-201574357
                         --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         +R+++t+eql +Lee+++   r+psa+++++++++l    +++ ++V++WFqN++a++++
  Pavir.3KG119400.1.p 15 TRWCPTSEQLMILEEMYRGgLRTPSASQIQQITAHLacygRIEGKNVFYWFQNHKARDRQ 74
                         7*****************99*************************************996 PP
2Wus_type_Homeobox115.42.8e-371575464
    Wus_type_Homeobox  4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                         tRW+Pt+eQ++iLee+y+ GlrtP++++iq+ita+L+ yG+ie+kNVfyWFQN+kaR+rqk
  Pavir.3KG119400.1.p 15 TRWCPTSEQLMILEEMYRGGLRTPSASQIQQITAHLACYGRIEGKNVFYWFQNHKARDRQK 75
                         8***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.4E-41279IPR001356Homeobox domain
CDDcd000863.84E-51575No hitNo description
PfamPF000465.8E-181574IPR001356Homeobox domain
SuperFamilySSF466892.27E-101575IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-71674IPR009057Homeodomain-like
PROSITE profilePS500719.9932075IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MPPSQQDLPV VAGPTRWCPT SEQLMILEEM YRGGLRTPSA SQIQQITAHL ACYGRIEGKN  60
VFYWFQNHKA RDRQKLRRRL CMSHHLLSCA QYYAAAHHGH GFLAAPPPAP YVFDQADAGQ  120
LLSPTSPTPA AAAAAAAAAY GYYYPATAAF AAAPARRCAG AATPPLPTQL FHYQAAGGGG  180
TAPVEALGRP EYSLGKLDNF GVAPDDVVVS SAAPVDMGPP GFEVAPAPAA FCRPLKTLDL  240
FPGGLKEEQH DVRGLIKH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG119400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0401841e-135BT040184.1 Zea mays full-length cDNA clone ZM_BFc0070F13 mRNA, complete cds.
GenBankKJ7269461e-135KJ726946.1 Zea mays clone pUT3492 HB transcription factor (HB82) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960326.11e-125putative WUSCHEL-related homeobox 2
TrEMBLA0A1E5VXX11e-133A0A1E5VXX1_9POAL; Putative WUSCHEL-related homeobox 2
STRINGPavir.Ca00701.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21773897
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.15e-38WOX family protein