PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG121900.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 212aa    MW: 22083.2 Da    PI: 6.8473
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG121900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260136.78.6e-43371361100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+C++ Cvlapyfp ++p+kfa +h++FGasn++kll++lpee+r da+ss+vyeA ar+rdPvyG++g i +lq+q++ l
  Pavir.3KG121900.1.p  37 PCAACKILRRRCVDRCVLAPYFPPTEPHKFATAHRVFGASNIIKLLQELPEEHRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNDL 126
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          ka+la++++e
  Pavir.3KG121900.1.p 127 KAQLARAHAE 136
                          ******9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.01136137IPR004883Lateral organ boundaries, LOB
PfamPF031951.2E-4237134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MDSSSDTAAT AALPHGGAST PPTSPPPQQQ PAVVLSPCAA CKILRRRCVD RCVLAPYFPP  60
TEPHKFATAH RVFGASNIIK LLQELPEEHR ADAVSSMVYE ASARIRDPVY GCAGAICQLQ  120
KQVNDLKAQL ARAHAELAAA RAQHAHLLAL LCVEVAAASS PAYCAAVNYP SAQLVAAAPA  180
AQADALYVVD GGSGLQLQAS PVSWADEPLW T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-443613710111LOB family transfactor Ramosa2.1
5ly0_B6e-443613710111LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG121900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960340.11e-122LOB domain-containing protein 1
SwissprotQ9SK082e-61LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A3L6SZG81e-128A0A3L6SZG8_PANMI; LOB domain-containing protein 1
STRINGPavir.Ca00718.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26453790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.19e-54LOB domain-containing protein 1