PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG129700.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 347aa    MW: 37153.9 Da    PI: 4.7591
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG129700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.37.5e-183784148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT eEd+llv+++  +G g+W++ a+  g++Rt+k+c++rw++yl
  Pavir.3KG129700.1.p 37 RGPWTVEEDLLLVNYIDAHGEGRWNSLAHSAGLKRTGKSCRLRWLNYL 84
                         89********************************************97 PP
2Myb_DNA-binding491.4e-1590133146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+ E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Pavir.3KG129700.1.p  90 RGNITAAEQLLILELHSRWGNR-WSKIAQHLP-GRTDNEIKNYWRT 133
                          7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.8293288IPR017930Myb domain
SuperFamilySSF466893.18E-3034131IPR009057Homeodomain-like
SMARTSM007176.5E-153686IPR001005SANT/Myb domain
PfamPF002491.9E-163784IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-223891IPR009057Homeodomain-like
CDDcd001672.58E-113984No hitNo description
SMARTSM007173.2E-1489137IPR001005SANT/Myb domain
PROSITE profilePS5129418.25289139IPR017930Myb domain
PfamPF002492.8E-1490133IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2292138IPR009057Homeodomain-like
CDDcd001679.84E-1194133No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MDMAGGLDEL EVLAMSPGGS AASAAAAGSE DVADLRRGPW TVEEDLLLVN YIDAHGEGRW  60
NSLAHSAGLK RTGKSCRLRW LNYLRPDVRR GNITAAEQLL ILELHSRWGN RWSKIAQHLP  120
GRTDNEIKNY WRTRVQKHAK QLRCDVNSRQ FRDVVRHVWM PRLAERVQAE SAGAGAGAGQ  180
AAAAAAPEAA PATTTASAPP AYHHGPYGGH RQSADVLVPP NKAHGGYAYA DYFYYSYSEP  240
GQAAAPAAMS PDDTSSALRS TLTDASATTP TNEGCGAGGA AAGPATDGAD DVVQEEEDDV  300
FAGTWSELLA TTGRDDDSKI GLPDFEFGEF EDNLWSLEDL CLQQLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-25321372106B-MYB
1gv2_A1e-25341371103MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25351372103C-Myb DNA-Binding Domain
1msf_C2e-25351372103C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaves. Expressed in roots and shoots. Expressed at low levels in flowers. {ECO:0000269|PubMed:22301384}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG129700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794341e-131HF679434.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB28 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806553.10.0transcription factor MYB2-like
SwissprotQ10MB43e-88MYB2_ORYSJ; Transcription factor MYB2
TrEMBLA0A2S3H7R21e-179A0A2S3H7R2_9POAL; Uncharacterized protein
STRINGPavir.Ca00769.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G48000.18e-81myb domain protein 112
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang A,Dai X,Zhang WH
    A R2R3-type MYB gene, OsMYB2, is involved in salt, cold, and dehydration tolerance in rice.
    J. Exp. Bot., 2012. 63(7): p. 2541-56
    [PMID:22301384]
  3. Chen X, et al.
    The NAC family transcription factor OsNAP confers abiotic stress response through the ABA pathway.
    Plant Cell Physiol., 2014. 55(3): p. 604-19
    [PMID:24399239]
  4. Lv Y, et al.
    New insights into the genetic basis of natural chilling and cold shock tolerance in rice by genome-wide association analysis.
    Plant Cell Environ., 2016. 39(3): p. 556-70
    [PMID:26381647]
  5. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]