PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG136500.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GATA

Protein Properties

Length: 120aa MW: 12915.6 Da PI: 7.8205

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG136500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	23.7	6.9e-08	20	34	21	35
GATA 21 tLCnaCGlyyrkkgl 35 +LCnaCG++y+k+++ Pavir.3KG136500.1.p 20 SLCNACGIRYKKEER 34 5***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.50.10	6.9E-5	19	34	IPR013088	Zinc finger, NHR/GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
MHARREFDLT EFPFAVPSQS LCNACGIRYK KEERRAAAAV APAPAPQEYA CGGYARQQPP 60 QPQWGCYGAA AAKSASFGMY GGDVVDAAAD GPCLSWMLNV MPSSPAFAVR ERPTLFQYY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG136500.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681231.1	2e-47	GATA transcription factor 15
TrEMBL	A0A1E5WAB7	3e-48	A0A1E5WAB7_9POAL; Uncharacterized protein
STRING	Pavir.J26908.1.p	3e-51	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1665	37	102

Link Out ? help Back to Top
Phytozome	Pavir.3KG136500.1.p