PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG142000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

MYB_related

Protein Properties

Length: 181aa MW: 20392.8 Da PI: 10.1779

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG142000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.4	3.9e-14	19	65	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r+ WT eE+ +++++ +++G g+Wk I+r++ +++t+ q+ s+ qky Pavir.3KG142000.1.p 19 RLLWTIEEHRQFLHGLQMYGRGNWKNISRHFVTTKTPVQVSSHAQKY 65 677*******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.9E-11	12	68	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.987	14	70	IPR017930	Myb domain
SuperFamily	SSF46689	9.66E-17	16	71	IPR009057	Homeodomain-like
SMART	SM00717	2.5E-10	18	68	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	5.5E-15	18	68	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-11	21	65	IPR001005	SANT/Myb domain
CDD	cd00167	1.55E-9	22	66	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MVEEVSQVVI PQQERRHKRL LWTIEEHRQF LHGLQMYGRG NWKNISRHFV TTKTPVQVSS 60 HAQKYFRRVE RTTEKQRYSI NDVGLYDAEP LAQNNSSSLE ALSFAGGANN QNNYGSGSYL 120 ATMNNLAQIW SPFLYRTAQA SSSQATIRIW TGQQMGSSPS ATLAPEGPKI QMAWIGNSNM 180 *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG142000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806558.1	3e-82	uncharacterized protein LOC112885100
TrEMBL	A0A3L6SYG9	1e-100	A0A3L6SYG9_PANMI; Protein REVEILLE 4-like
STRING	Pavir.Ca01212.1.p	1e-132	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP842	30	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38090.1	2e-24	MYB family protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG142000.1.p