PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG142100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 225aa    MW: 25511.5 Da    PI: 9.8406
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG142100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.95.4e-091151511147
                          HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +++++ +++G g+Wk I+r++ +++t+ q+ s+ qky
  Pavir.3KG142100.1.p 115 QFLRGLHMYGRGDWKNISRHFVTTKTPVQVSSHAQKY 151
                          79**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0072101154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-6110156IPR009057Homeodomain-like
SuperFamilySSF466895.98E-11113157IPR009057Homeodomain-like
TIGRFAMsTIGR015577.4E-10113154IPR006447Myb domain, plants
CDDcd001672.12E-6114152No hitNo description
PfamPF002491.4E-6115151IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPTTTIYADD TNQKHNSIVN QLQAWFPLKE KRQVVKLYVE LVVEMTMREG QIGNQSGNSL  60
VNNNYGIPRE DPTMDNMDMS PGSLKGKQSE APRMVEEAPQ QQVTIPHQER RHKRQFLRGL  120
HMYGRGDWKN ISRHFVTTKT PVQVSSHAQK YFRRVERTTE KQRYSINDDI GLNDAKPWVH  180
NSSSSQEALA FAGGAYNPNG HGSSSQFATM NNLAQAWSPF LYSA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG142100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004959144.19e-87transcription factor SRM1
RefseqXP_025806559.15e-88myb-like protein I
TrEMBLA0A3L6SUI21e-117A0A3L6SUI2_PANMI; Protein REVEILLE 4-like
STRINGPavir.Ca01211.1.p1e-141(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.15e-21MYB family protein