PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG163300.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 206aa    MW: 21971.1 Da    PI: 7.4429
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG163300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30112170159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYG+K vk+s++pr+YYrC+s+gC vkk+ver+++dp++v++tY g Hnh 
  Pavir.3KG163300.1.p 112 LDDGFKWRKYGKKAVKNSPNPRNYYRCSSEGCGVKKRVERDRDDPRYVITTYDGVHNHA 170
                          59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-33100172IPR003657WRKY domain
SuperFamilySSF1182906.41E-28104172IPR003657WRKY domain
PROSITE profilePS5081131.996107172IPR003657WRKY domain
SMARTSM007741.2E-35112171IPR003657WRKY domain
PfamPF031061.7E-24113169IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAASLGLNPE ALFSSHSSSY SSPFMSGYAP QRFPAADNTV VDDAAAFSSE LDDLCQLEYS  60
PAPLIAGAGA GAGGGAGDDR DEKPMWCGGR DEKRPRSSGR IGFRTRSEVE ILDDGFKWRK  120
YGKKAVKNSP NPRNYYRCSS EGCGVKKRVE RDRDDPRYVI TTYDGVHNHA SPGAAAIIQY  180
GGGGFYSPQH SGSPSAASYS GSYLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-2897172277Probable WRKY transcription factor 4
2lex_A3e-2897172277Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG163300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586091e-162KU058609.1 UNVERIFIED: Panicum miliaceum WRKY15-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809689.11e-118probable WRKY transcription factor 51
TrEMBLA0A2S3H9031e-117A0A2S3H903_9POAL; Uncharacterized protein
TrEMBLA0A2T7E8Z31e-117A0A2T7E8Z3_9POAL; Uncharacterized protein
STRINGPavir.Ca01028.1.p1e-149(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.18e-41WRKY DNA-binding protein 50