PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG172600.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GATA
Protein Properties Length: 170aa    MW: 18399.2 Da    PI: 10.2441
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG172600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35e-196195135
                 GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                         C+ C+tt Tp+WR gp g+++LCnaCG++yrkk++
  Pavir.3KG172600.1.p 61 CVECRTTATPMWRGGPTGPRSLCNACGIRYRKKRR 95
                         ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-1455112IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.13E-135696No hitNo description
Gene3DG3DSA:3.30.50.101.2E-146096IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.1766191IPR000679Zinc finger, GATA-type
PROSITE patternPS0034406186IPR000679Zinc finger, GATA-type
CDDcd002024.89E-116196No hitNo description
PfamPF003206.9E-176195IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0048527Biological Processlateral root development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MLPSTTCALP LVTINSTFCF FCSKRNDLSR SSWLISPSSV GCLLGSLQVI GIAAEPGRPC  60
CVECRTTATP MWRGGPTGPR SLCNACGIRY RKKRRQELGL DNNRKPQQNQ QPPQQPQHQD  120
HSHAPSAVSD NKSSGLQVVK KRRVLMGVEE AAILLMALSS SSRSTLLHG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.319490.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG172600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280121e-81KJ728012.1 Zea mays clone pUT6147 C2C2-GATA transcription factor (GATA12) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807325.15e-54GATA transcription factor 23-like
TrEMBLA0A3L6REC34e-55A0A3L6REC3_PANMI; GATA transcription factor 23-like
STRINGPavir.J34225.1.p1e-57(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.14e-20GATA transcription factor 23