PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG177000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 241aa    MW: 27288.1 Da    PI: 7.5824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG177000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-14141240999
                          HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
                   B3   9 dvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                           +++++ + ++  fa+e+      +  +++  l+le  ++++W  +l +    ++ ++   + +GW +Fv +n+L+ gD+++F+l++  +
  Pavir.3KG177000.1.p 141 TSTSENGFPMSMYFATEYarrclPLA-TQDLILQLEGCQSKQWHTELHVysvhSRARNYARIYSGWAKFVTENRLCMGDICMFELVKMtE 229
                          34444445555555555555557444.577899*************95555555555558899***********************8889 PP

                          EE..EEEEE-S CS
                   B3  89 efelvvkvfrk 99 
                          + ++ v+++rk
  Pavir.3KG177000.1.p 230 KLKMIVHLIRK 240
                          99999999885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-14127237IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.18E-14127239IPR015300DNA-binding pseudobarrel domain
CDDcd100171.13E-13132239No hitNo description
PROSITE profilePS5086310.701137240IPR003340B3 DNA binding domain
PfamPF023622.6E-12141240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MCDDSVKIID PPHSKVDIID LSSSSSDDDN NVAAYTEKLA RLQKQHFDHC AKSRRIDSTS  60
SQSIKLNHDH ETHEDLQKYM VDGVSRSRSP LNSNYSEVPS TPLYIISGSI TLSAAQGKMV  120
LEKVQAIGSE FPIFVSVMNR TSTSENGFPM SMYFATEYAR RCLPLATQDL ILQLEGCQSK  180
QWHTELHVYS VHSRARNYAR IYSGWAKFVT ENRLCMGDIC MFELVKMTEK LKMIVHLIRK  240
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG177000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002439346.11e-80B3 domain-containing protein LOC_Os12g40080
TrEMBLA0A1E5W3P11e-105A0A1E5W3P1_9POAL; Uncharacterized protein
STRINGPavir.Ca01026.1.p1e-179(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16378713
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-06B3 family protein