PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG188900.3.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 423aa    MW: 46670 Da    PI: 8.0407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG188900.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.33.8e-33501961128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.. 77 
                          lp+G++F+P+d+el+ e+L+  ve+        +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r   
  Pavir.3KG188900.3.p  50 LPAGVKFDPSDQELI-EHLESLVEEGGsrahplI---NdfipTIQGDdGICYTHPENLP-GVTRNGLSKHFFHRPSKAYTTGTRKRRRiq 134
                          799************.99*****99985665442...133333655546**********.455556789******************768 PP

                  NAM  78 ..........tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                    + +++W++tgk+++v++ +g+++g+kk+Lv+y   g++ k++kt+Wvmh+y+l
  Pavir.3KG188900.3.p 135 sehgshgsedVGEARWHKTGKTRPVIV-GGRQKGCKKILVLYssYGKQGKPKKTNWVMHQYHL 196
                          999999988877999************.99************6558999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3545214IPR003441NAC domain
PROSITE profilePS5100532.05650214IPR003441NAC domain
PfamPF023653.5E-1451196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MNRGHSGSMI SSCGTSELTD EKNKDSQTSA SRHCPSCGHS LDCNPDMIGL PAGVKFDPSD  60
QELIEHLESL VEEGGSRAHP LINDFIPTIQ GDDGICYTHP ENLPGVTRNG LSKHFFHRPS  120
KAYTTGTRKR RRIQSEHGSH GSEDVGEARW HKTGKTRPVI VGGRQKGCKK ILVLYSSYGK  180
QGKPKKTNWV MHQYHLGDQE EKDGELVVSK VFYQTQLRST TVTVEHHTRD GDEKVAETSK  240
AMQNVLPGFV ADTTAVTIAM VPQQQQQQKR QRQPDGQCSF APAKMSHEVG VVGGQVADDQ  300
GEKRDNHHIP SQHNVLSDLH AKPVPTMSFH VGTPLNTVST AISPQARDRS VVLDSRFCYP  360
AILHRNERNQ EQQQKVGRRS AEMEGLIIAC QSASSTEAGA SPERPYQHNW PPDQPRSTSI  420
TM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-124819613140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127131RKRRR
2128132KRRRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG188900.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808650.10.0NAC domain-containing protein 10-like isoform X2
TrEMBLA0A2S3H8Q70.0A0A2S3H8Q7_9POAL; Uncharacterized protein
STRINGPavir.J36494.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.12e-99NAC domain containing protein 75