PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG204200.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 526aa    MW: 54330.1 Da    PI: 6.5691
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG204200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.8e-30260318259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                          +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed+ v+++tYeg Hnh+
  Pavir.3KG204200.1.p 260 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDKAVLITTYEGAHNHQ 318
                          7***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.7E-33245320IPR003657WRKY domain
SuperFamilySSF1182901.57E-27252320IPR003657WRKY domain
PROSITE profilePS5081129.321254320IPR003657WRKY domain
SMARTSM007741.0E-36259319IPR003657WRKY domain
PfamPF031062.4E-26261318IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MDLVPKQEQH KEEEEKEEEE GMILAEHGSR ANFGHGGGGG RRSEIKEVDF FSTGGARRRN  60
GDDGDGDGEH GNREAGALGR GNTTVNTALD LLTTAAATPV NGGEGTAAGA ASDHKEASTV  120
EGELRQAGEE NRRLRRMLDD LTRSYSALYH QLIQAQQQQQ QQAGGAANSM VPAAATVPAG  180
LQFVDPRMAP AIRAPAALDG GDSDGGSGSA GEADRQNSGR SAQQEGSGTP ERDENAERAE  240
APLRRVRVSV RARSEAPMIS DGCQWRKYGQ KMAKGNPCPR AYYRCTMATG CPVRKQVQRC  300
AEDKAVLITT YEGAHNHQLP PAAAAMAKTT SAAAAMLLSG PAAAGRDAGA LFAGHHVAAP  360
LFQSYPYASA AMGATLSASA PFPTITLDLT HPPPASAAGL LPHRPPALPA MPFPMYGGFP  420
AAHRPAVPPQ PTTVSLGMMD GRNRSALETM TAAITRDPNF TTALAAAIST IIGGGAEAAP  480
RSGAGANGDG NSDSGGTEST TTAAAAGARE TALHALLQRL HDSRQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-22247322276WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG204200.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025809808.10.0probable WRKY transcription factor 47 isoform X1
RefseqXP_025809809.10.0WRKY transcription factor 6-like isoform X2
TrEMBLA0A3L6SZ680.0A0A3L6SZ68_PANMI; Putative WRKY transcription factor 47
STRINGPavir.J02788.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.13e-46WRKY family protein