PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG210500.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 260aa    MW: 28062.5 Da    PI: 9.0855
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG210500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.32.1e-293993359
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                          +rY+eCl+NhAa+lGgh+vDGCgEfmp  g+    +alkCaACgCHR+FHR++ ++
  Pavir.3KG210500.1.p 39 VARYHECLRNHAAALGGHVVDGCGEFMPGAGA--GDDALKCAACGCHRSFHRKDDAQ 93
                         579*************************8555..589****************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257742.0E-184090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.0E-254090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.1E-254190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.314290IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.5E-30169233IPR009057Homeodomain-like
SuperFamilySSF466894.48E-19169233IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-27175231IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEFRGQEEPA EGMGASSAPP VAPSRAAPAP GNHAAPPEVA RYHECLRNHA AALGGHVVDG  60
CGEFMPGAGA GDDALKCAAC GCHRSFHRKD DAQRRQLLLP APAPPVTPTA PRVPLLLPPP  120
HPYAAASQPN YAPPPPLFPY HGTPSGSGGT TTESSSEERG PPSALAAAAQ GHLRRKRFRT  180
KFTPEQKEQM LAFAERLGWR MQKQDEALVQ QFCEQVGVRR QVFKVWMHNN KHTGSGSRRQ  240
PQLPPQEQQS QQQPPQQQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-281762371879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG210500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849211e-166KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810260.11e-121zinc-finger homeodomain protein 6-like
SwissprotB8AX532e-91ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A2T7E9Z61e-120A0A2T7E9Z6_9POAL; Uncharacterized protein
STRINGPavir.J15638.1.p1e-144(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.15e-27homeobox protein 21