PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG211100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ZF-HD
Protein Properties Length: 259aa    MW: 28015.5 Da    PI: 9.3646
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG211100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer92.44e-293991357
          ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                          +rY+eCl+NhA++lGgh+vDGCgEfmp  g+    +alkCaACgCHR+FHR++ 
  Pavir.3KG211100.1.p 39 VARYHECLRNHAVALGGHVVDGCGEFMPGAGA--GDDALKCAACGCHRSFHRKDD 91
                         579*************************8555..589****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.7E-254090IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-184190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.6E-254190IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152324.9234290IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.9E-28170234IPR009057Homeodomain-like
SuperFamilySSF466893.19E-16171234IPR009057Homeodomain-like
TIGRFAMsTIGR015654.1E-25177232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEFRGQEEPA EGMGASSAPP VAPSRAAPAP GNHAAPPEVA RYHECLRNHA VALGGHVVDG  60
CGEFMPGAGA GDDALKCAAC GCHRSFHRKD DGQRRQLLLP APAPAPPVTP TAPRVPLLLP  120
PPHPYAAASH PNYAPPPPPF PYHGTPSGRG GTTTESSSEE RGPPPAHAAA AQGHLRRKRF  180
RTKFTPEQKE QMLAFAERLG WRMQQDEALV QQFCEQVGVR RQVFKVWMHN NKHTGSGSRR  240
QPQLPPQEQQ SQQQPRQQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A9e-261782381879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG211100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961117.11e-117zinc-finger homeodomain protein 6-like
SwissprotB8AX536e-87ZHD6_ORYSI; Zinc-finger homeodomain protein 6
TrEMBLA0A3L6SWE31e-118A0A3L6SWE3_PANMI; Zinc-finger homeodomain protein 6-like
STRINGPavir.Ca01004.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81535145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.17e-25homeobox protein 21