PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG212300.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HD-ZIP

Protein Properties

Length: 251aa MW: 27119.4 Da PI: 9.4179

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG212300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48.7	1.3e-15	73	127	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 + ++++k+q +eLe++F++n+ ++++++e LA++l++t +qV vWF NrR + +k Pavir.3KG212300.1.p 73 QYRKLSKDQSDELEAAFQQNNFIDKRTKEALAERLKITLKQVDVWFLNRRSRLRK 127 67789***********************************************997 PP
2	HD-ZIP_I/II	65.3	1.4e-21	74	161	3	90
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 r+lsk+q+ LE F++++ ++++ K++la++L+++ +qv+vWF nrR R +++q+E+d + k+++++l+++++rL+++ ++L+++ Pavir.3KG212300.1.p 74 YRKLSKDQSDELEAAFQQNNFIDKRTKEALAERLKITLKQVDVWFLNRRSRLRKQQVEEDLMQHKQQVEELTKQKNRLQRKIDKLKKR 161 59***********************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.6E-18	55	125	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.24E-16	65	130	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.034	68	128	IPR001356	Homeobox domain
SMART	SM00389	1.7E-14	70	132	IPR001356	Homeobox domain
CDD	cd00086	3.05E-15	70	129	No hit	No description
Pfam	PF00046	5.1E-13	72	127	IPR001356	Homeobox domain
Gene3D	G3DSA:1.20.5.170	3.7E-4	126	170	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
HNDRSFLFVS LCVHYTGGGN DGSGNENDAT ELVLVDTTNH PQHAGQEDGG VLARSGVDVE 60 GDAGGGSFVR RTQYRKLSKD QSDELEAAFQ QNNFIDKRTK EALAERLKIT LKQVDVWFLN 120 RRSRLRKQQV EEDLMQHKQQ VEELTKQKNR LQRKIDKLKK RNKELKAKLK EATTQAAPPP 180 QPSPSVMLVP LPAALNTLAG LYPAGFEGNV TDMAAAAAAA LNTQQGSAAA AALPSSSAPP 240 VPPSDGRSSI *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	120	126	RRSRLRK
2	120	127	RRSRLRKQ
3	155	160	DKLKKR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG212300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806637.1	1e-104	homeobox-leucine zipper protein HOX3-like
TrEMBL	A0A3L6RCS6	1e-102	A0A3L6RCS6_PANMI; Homeobox-leucine zipper protein HOX3-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP40601	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47370.1	3e-16	Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein

Link Out ? help Back to Top
Phytozome	Pavir.3KG212300.1.p