PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG217000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family GRAS
Protein Properties Length: 498aa    MW: 52049 Da    PI: 5.27
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG217000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.13.8e-104844571373
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                          lv+lL++ A a++sgd ++a+  La+ + + s  +  + + R+a++f+ ALa+rl+   ++ ++  pp +++       +  ++ f+++ 
  Pavir.3KG217000.1.p  84 LVHLLVTSAGAIQSGDYSAAHGNLAEARAILSVIAtsTGIGRVAKHFADALAQRLFPAYPQAAAPAPPPAAP-------ADLYSHFYDAG 166
                          68****************************66554247899****************777777665555554.......567888***** PP

                 GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                          P+l+f++ taNqa+l+a+eg++rvH++Df ++qGlQWp+L++aL++R++gpp lRiTg+g+  +g  +el+e+g rLa+fA++lgvpf f
  Pavir.3KG217000.1.p 167 PYLNFAYSTANQALLDAFEGCDRVHVVDFALMQGLQWPTLIHALSQREGGPPYLRITGIGPYPTGAGDELREVGIRLAEFARSLGVPFCF 256
                          *************************************************************9999************************* PP

                 GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsles...erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                          + l +++l+ l+ ++L++ pgEala n++lqlhrll ++ + +    ++d +L+lv +l+P+v++vveqeadhn++++lerf++al +y+
  Pavir.3KG217000.1.p 257 QGLCVDQLDGLSSWMLKIVPGEALAFNSILQLHRLLVDPDADPAvaaPIDILLDLVAELKPRVFTVVEQEADHNRPPLLERFTNALFHYA 346
                          ***********************************96655544444499***************************************** PP

                 GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqak.lllrkvk...sdgyrv 351
                          a+fds++a  ++   +  ++ +++l+ ei ++v+ eg++r erhe l++Wrerl +aG+++vp++ ++++ a   llr ++   + gy++
  Pavir.3KG217000.1.p 347 AMFDSMAAV-GHRGGAIDSLAEAYLRGEIFDIVCGEGSARAERHEPLGRWRERLARAGLTQVPFGRNEVQLATaQLLRATPsspGSGYSI 435
                          ******887.45556666666677*****************************************9988766514666665523456*** PP

                 GRAS 352 eeesgslvlgWkdrpLvsvSaW 373
                           e  gsl l W+drpL++++aW
  Pavir.3KG217000.1.p 436 LECAGSLALAWHDRPLYAATAW 457
                          ********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098554.01258434IPR005202Transcription factor GRAS
PfamPF035141.3E-10184457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MGLVPFGLLP MDPAAAAAAA LTGAISPPFP AGAAANSATY CIDPALLASL LPPGSGRQPA  60
VPAAAAEATR QRREEEEEAA AIRLVHLLVT SAGAIQSGDY SAAHGNLAEA RAILSVIATS  120
TGIGRVAKHF ADALAQRLFP AYPQAAAPAP PPAAPADLYS HFYDAGPYLN FAYSTANQAL  180
LDAFEGCDRV HVVDFALMQG LQWPTLIHAL SQREGGPPYL RITGIGPYPT GAGDELREVG  240
IRLAEFARSL GVPFCFQGLC VDQLDGLSSW MLKIVPGEAL AFNSILQLHR LLVDPDADPA  300
VAAPIDILLD LVAELKPRVF TVVEQEADHN RPPLLERFTN ALFHYAAMFD SMAAVGHRGG  360
AIDSLAEAYL RGEIFDIVCG EGSARAERHE PLGRWRERLA RAGLTQVPFG RNEVQLATAQ  420
LLRATPSSPG SGYSILECAG SLALAWHDRP LYAATAWSAA GGSGAGAVAG TAEGRDNGRR  480
PPNGSREINS AGNVAIA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-4610645833378Protein SCARECROW
5b3h_D2e-4610645833378Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG217000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025806638.10.0DELLA protein DWARF8-like
TrEMBLA0A3L6SWQ50.0A0A3L6SWQ5_PANMI; DELLA protein DWARF8-like
STRINGPavir.Ca00986.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP99838138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.13e-80GRAS family protein