PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG235200.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 312aa MW: 35035.6 Da PI: 9.3268

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG235200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	54.9	2.9e-17	62	141	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF vr +s+k+ n+ t+++ vCs++g+++ +++ + r gC a++++ +++d+ w+++++++eHnH+l+ Pavir.3KG235200.1.p 62 DFYNLYSWEIGFGVRYGRSRKN-SNKYRTRQDIVCSCQGQSTAGSTR---------TCRRGCPAMIRLLRTHDHGWYISRVVKEHNHDLS 141 6****************999.67779*******99987665.........8899**************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-13	62	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.0E-6	263	299	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MDSFFACYVV GGRAISGPDA RIAPWEESAV SKALRAGEGR SNKPVFEPVV GTSFNSCEEA 60 KDFYNLYSWE IGFGVRYGRS RKNSNKYRTR QDIVCSCQGQ STAGSTRTCR RGCPAMIRLL 120 RTHDHGWYIS RVVKEHNHDL SDSYAENKQW NSHNQIDALT KDFIRKLRNN NVSIGRVCSL 180 VGAGGNVDAV PLRKETVRNV CAKLSQENMR NDLGKTIELL QQMKDADPGM SVKFRVDTDG 240 RLQSMLWCTG KNKSDYEQFG DAITFDTTYR TNLYKMPFGL FVGVNNHFQS VIFGGVLLTT 300 AIRIYADVPY K*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG235200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025822596.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_025822597.1	1e-157	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A1B6Q0S6	1e-132	A0A1B6Q0S6_SORBI; Uncharacterized protein
TrEMBL	A0A1W0VV91	1e-132	A0A1W0VV91_SORBI; Uncharacterized protein
STRING	Pavir.J23522.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP619	19	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-29	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3KG235200.1.p