PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pavir.3KG241000.1.p

Organism

Panicum virgatum

Taxonomic ID

38727

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 175aa MW: 20624.8 Da PI: 9.1252

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pavir.3KG241000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.7	5.8e-11	36	95	31	90
FAR1 31 rtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 ++ C +g+ree++ k ++k+r+ ++ tr gC akl++ +++ +g+w+v+++ eHnH ++ Pavir.3KG241000.1.p 36 EKTIC--QGFREEKELKrENKKRKLQNITRFGCPAKLVIARDQnTGQWHVKDFICEHNHLMV 95 55555..5666655544358899999*************999*************876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.0E-9	40	95	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MPGAEYNVIV RKVFDDEEEG YEFYNNYAKG KDLVSEKTIC QGFREEKELK RENKKRKLQN 60 ITRFGCPAKL VIARDQNTGQ WHVKDFICEH NHLMVEQDLA CLLRSHRRNR DEQKADIVVM 120 QISGIRKHQI MDIKEMLYGG YDKIGFTRRD LYISIIAIRW TQWLLAMLKQ SPVT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	48	56	LKRENKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pavir.3KG241000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466896.2	4e-62	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A0Q3RQA3	4e-50	A0A0Q3RQA3_BRADI; Uncharacterized protein
STRING	Pavir.Ca01534.1.p	1e-128	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2449	9	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-15	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pavir.3KG241000.1.p