PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG246100.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 472aa    MW: 49989.2 Da    PI: 8.2052
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG246100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.65.4e-33200258260
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                          +DgynWrKYGqK+vkgse+prsYY+Ct+++C++kkkvers  d+++++i+Y+g Hnh+k
  Pavir.3KG246100.1.p 200 EDGYNWRKYGQKQVKGSENPRSYYKCTYHSCSMKKKVERSLADGRITQIVYKGAHNHPK 258
                          8********************************************************85 PP
2WRKY105.82.2e-33351409159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDg++WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Pavir.3KG246100.1.p 351 LDDGFRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDHRAVITTYEGKHNHD 409
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-29192259IPR003657WRKY domain
PROSITE profilePS5081126.911194259IPR003657WRKY domain
SuperFamilySSF1182907.06E-26197259IPR003657WRKY domain
SMARTSM007741.0E-35199258IPR003657WRKY domain
PfamPF031061.2E-24200257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.9E-37336411IPR003657WRKY domain
SuperFamilySSF1182902.09E-29343411IPR003657WRKY domain
PROSITE profilePS5081137.987346411IPR003657WRKY domain
SMARTSM007743.9E-39351410IPR003657WRKY domain
PfamPF031069.2E-26352409IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MASSTGSLEH GGFTFTPPPF ITSFTELLSG SGDMLGADQE RSPRGLFHRG ARGGVPKFKS  60
AQPPSLPISP PPMSPSSYFA IPAGLSPAEL LDSPVLLNSS SNILASPTTG AIPAQRFDWK  120
QAAELIASQQ EDSRAAGGGF NDFSFHTASS NSMPTQTASF PAFKEEQQVE AVNKQSVAAA  180
TNSNKASSGN NNSSSNTKLE DGYNWRKYGQ KQVKGSENPR SYYKCTYHSC SMKKKVERSL  240
ADGRITQIVY KGAHNHPKPL STRRNSSGGA AAAEDQQAAS GLSGATPENS SVTFGDDEAE  300
NGSKRSDGDE PDAKRWKEDG ENEGSSGGPG GSKPVREPRL VVQTLSDIDI LDDGFRWRKY  360
GQKVVKGNPN PRSYYKCTTP GCPVRKHVER ASHDHRAVIT TYEGKHNHDV PVGRGAASRA  420
AAPVAQPLAA PGAMMPYTLE MLGGAGGAYG GYAAAAKDEP RDDLFVDSLL C*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37187411577Probable WRKY transcription factor 4
2lex_A9e-37187411577Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.4310.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: In dry seeds, expressed in aleurone cells and embryos. Levels drop rapidly but transiently in the embryos of imbibed seeds. {ECO:0000269|PubMed:19199048}.
UniprotTISSUE SPECIFICITY: Expressed in aleurone cells (PubMed:15618416). Mostly expressed in aleurone layers and leaves, and, to a lower extent, in roots, panicles and embryos (PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:26025535}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG246100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586030.0KU058603.1 UNVERIFIED: Panicum miliaceum WRKY16-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025807559.10.0WRKY transcription factor WRKY24-like
SwissprotQ6IEQ71e-118WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A2T7EFC50.0A0A2T7EFC5_9POAL; Uncharacterized protein
STRINGPavir.Ca01475.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85333448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-90WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]