PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG267000.1.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 365aa    MW: 42116.2 Da    PI: 9.2033
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG267000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-1739127299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk +     +++g +++p+kf+++ +++   +k l l+ ++g++W +++   k+ ++ ++ +GW +F+kan+L+e+D ++F+++g+ +f 
  Pavir.3KG267000.1.p  39 FKLM--TGDFAQG-ISIPRKFVSNLNEQV--PKGLNLKAPDGKTWFIEV--AKNADELLFMSGWDNFAKANELQENDLLIFTRSGNYSF- 120
                          5555..4455555.9*******7665554..445***************..*******************************9998888. PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                            v++f++
  Pavir.3KG267000.1.p 121 -DVQIFDA 127
                          .9999987 PP
2B339.31.1e-12263355799
                          .-HHHHT.T-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                   B3   7 psdvlks.grlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                          + +v+ + ++l++  +fa++h +g   ++  l l+ ++  +W v++ +  + +++     W +Fv++n+L+   +++F+l++  + +++v
  Pavir.3KG267000.1.p 263 KTHVGHRnNLLTIHHEFAANHlEGR--SHDILLLRPRRKDKWYVRYYHASHTRGFNCH-RWVKFVRDNRLRKDYICIFELMKGtRMTTMV 349
                          44555442889*******9996433..333455666888*******666666665555.8*******************997669999** PP

                          EEEE-S CS
                   B3  94 vkvfrk 99 
                          v+v+rk
  Pavir.3KG267000.1.p 350 VHVLRK 355
                          ***997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.22635128IPR003340B3 DNA binding domain
SuperFamilySSF1019361.43E-2136130IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.9E-2137130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-1637126No hitNo description
SMARTSM010197.5E-1238128IPR003340B3 DNA binding domain
PfamPF023625.6E-1538127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-17249354IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-16250354IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-12255354No hitNo description
SMARTSM010191.3E-6257356IPR003340B3 DNA binding domain
PfamPF023621.6E-10257355IPR003340B3 DNA binding domain
PROSITE profilePS508639.855258356IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MPSRECRMSK MIHQGCESCR KWQDHYYLEH MVASKVRFFK LMTGDFAQGI SIPRKFVSNL  60
NEQVPKGLNL KAPDGKTWFI EVAKNADELL FMSGWDNFAK ANELQENDLL IFTRSGNYSF  120
DVQIFDASGC EKVPCFFTSK KGPCMHKHFD GIVDQHVEYC TLSDSDDLRM PLRLIGSPHK  180
ASTSKKMSGK TKPRKEPESP ASCSYHIKPE PISNDEQSDD RLCDSNYYYS RSASNLTGDE  240
RDQIFGLASI QPGNPAFVAV LHKTHVGHRN NLLTIHHEFA ANHLEGRSHD ILLLRPRRKD  300
KWYVRYYHAS HTRGFNCHRW VKFVRDNRLR KDYICIFELM KGTRMTTMVV HVLRKVDGRF  360
VMVA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1294298RPRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG267000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6616598e-41AY661659.1 Sorghum bicolor clone BAC 75D9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808341.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-144Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HFH20.0A0A2S3HFH2_9POAL; Uncharacterized protein
STRINGPavir.Ca02695.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-27B3 family protein