PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG267100.2.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 325aa    MW: 37377.3 Da    PI: 6.8297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG267100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.97.8e-1838125298
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk + +   +++g  ++p kfa++++g+ +++    l+ +sg++W + +  +k++++ +l +GW++Fvka++L+e+D ++F+  g+s+f 
  Pavir.3KG267100.2.p  38 FKLM-T-GDFAKG-TSIPEKFAQNFKGQITGG--FELNAPSGKTWHISV--DKRGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF- 119
                          5555.3.334444.69******9998887787..7788***********..*******************************9999999. PP

                          .EEEEE- CS
                   B3  92 lvvkvfr 98 
                            v vf+
  Pavir.3KG267100.2.p 120 -QVLVFE 125
                          .888776 PP
2B3469.6e-15217315199
                          EEEE-..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS
                   B3   1 ffkvltpsdvlks.grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 
                          f++vl++ +v ++ + l++p +fa++h   +e+s++++l+ ++   +W v + y  +  r++      +Fv++n+L+egD++vF+l +  
  Pavir.3KG267100.2.p 217 FVTVLKKQHVQRNnNSLIIPCRFAADHL--EERSQDIILRRPNRkDKWLVSY-YYSCYTRCFQNLPFFKFVRDNKLREGDICVFELLKGk 303
                          78888889998886889**********6..347889*****65549******.5555556666667999****************88666 PP

                          SEE..EEEEE-S CS
                   B3  88 sefelvvkvfrk 99 
                          ++ +++v+v+rk
  Pavir.3KG267100.2.p 304 MRVTMTVHVIRK 315
                          *********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-2130129IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.22534127IPR003340B3 DNA binding domain
CDDcd100172.16E-1536124No hitNo description
Gene3DG3DSA:2.40.330.109.1E-2136129IPR015300DNA-binding pseudobarrel domain
PfamPF023622.5E-1537125IPR003340B3 DNA binding domain
SMARTSM010191.7E-937127IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.1E-20209315IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-18210315IPR015300DNA-binding pseudobarrel domain
CDDcd100175.00E-15215314No hitNo description
PfamPF023625.3E-13217315IPR003340B3 DNA binding domain
SMARTSM010191.1E-6217316IPR003340B3 DNA binding domain
PROSITE profilePS5086310.503218316IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQQEHGQASM VEEGCDSCRK WQEHYYWEHM DVSKIRFFKL MTGDFAKGTS IPEKFAQNFK  60
GQITGGFELN APSGKTWHIS VDKRGDELFL MSGWEDFVKA HELQENDLLL FTCCGNSSFQ  120
VLVFEASGCE RVSSMFGNQI GPDMCKHVKN IVGQHGEPDA PNTSNFIVNY SANSDDGSDD  180
DFANSNCYYS MFANRLRDEE KEEIIGLASI QRNNPAFVTV LKKQHVQRNN NSLIIPCRFA  240
ADHLEERSQD IILRRPNRKD KWLVSYYYSC YTRCFQNLPF FKFVRDNKLR EGDICVFELL  300
KGKMRVTMTV HVIRKASDRF ILVG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.355320.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG267100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808344.10.0B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT21e-116Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2T7EIP40.0A0A2T7EIP4_9POAL; Uncharacterized protein
STRINGPavir.Cb00511.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-29B3 family protein