PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.3KG267100.4.p
Organism
Panicum virgatum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 246aa    MW: 27701.8 Da    PI: 5.0025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.3KG267100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.74.5e-1838126299
                          EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                   B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                          fk + +   +++g  ++p kfa++++g+ +++    l+ +sg++W + +  +k++++ +l +GW++Fvka++L+e+D ++F+  g+s+f 
  Pavir.3KG267100.4.p  38 FKLM-T-GDFAKG-TSIPEKFAQNFKGQITGG--FELNAPSGKTWHISV--DKRGDELFLMSGWEDFVKAHELQENDLLLFTCCGNSSF- 119
                          5555.3.334444.69******9998887787..7788***********..*******************************9999999. PP

                          .EEEEE-S CS
                   B3  92 lvvkvfrk 99 
                            v vf++
  Pavir.3KG267100.4.p 120 -QVLVFEA 126
                          .8887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.33E-2130129IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.22534127IPR003340B3 DNA binding domain
CDDcd100178.03E-1736124No hitNo description
Gene3DG3DSA:2.40.330.105.1E-2136129IPR015300DNA-binding pseudobarrel domain
PfamPF023621.4E-1537125IPR003340B3 DNA binding domain
SMARTSM010191.7E-937127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MQQEHGQASM VEEGCDSCRK WQEHYYWEHM DVSKIRFFKL MTGDFAKGTS IPEKFAQNFK  60
GQITGGFELN APSGKTWHIS VDKRGDELFL MSGWEDFVKA HELQENDLLL FTCCGNSSFQ  120
VLVFEASGCE RVSSMFGNQI GPDMCKHVKN IVGQHGEPDA PNTSNFIVNY SANSDDGSDD  180
DFANSNCYYS MFANRLRDEE KEEIIGLASI QRNNPAFVTV LKKQHVQRNN NSLELQRSLP  240
LSNGS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.355320.0callus
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.3KG267100.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025808344.11e-147B3 domain-containing protein Os12g0592300-like
SwissprotQ2QMT23e-73Y1223_ORYSJ; B3 domain-containing protein Os12g0592300
TrEMBLA0A2S3HF071e-146A0A2S3HF07_9POAL; Uncharacterized protein
STRINGPavir.Cb00511.1.p1e-150(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-23B3 family protein